GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:06:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS07010B07 KS07 Capsicum annuum cDNA, mRNA sequence.
BM066038.1:145-168
GGGTTGACATGGGTGAGCCCATTCTGAAGG145CATCAGATGTGCCCACTAAACTACCCCCTAATAGAGATCAATCTGTTGTTAAAG
Solanum melongena mRNA, clone: SmFL33E20, 5'end.
FS088968.1:671-694
AGGTTGACATGGGTGAGCCCATTCTGAAGG671CATCAGATGTGCCCACTAAACTACCCCCTAATAGAGATCAATCTGTCGTTAAAT
TSA: Capsicum annuum MGMT_Contig18589, mRNA sequence.
JW068833.1:727-750
GGGTTGACATGGGTGAGCCCATTCTGAAGG727CATCAGATGTGCCCACTAAACTACCCCCTAATAGAGATCAATCTGTTGTTAAAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:154043744-154043767
AGGGTTGATATGGGTGAGCCCTTCTGAAGG154043744CATCAGATGTGCCCACTAAACTACCCCCTTATAGAGATCAATCTGTCTTTAAAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:256685838-256685861
GGGTTGACATGGGTGAGCCCATTCTGAAGG256685838CATCAGATGTGCCCACTAAACTACCCCCTAATAGAGATCAATCTGTTGTTAAAG
KS07001H10 KS07 Capsicum annuum cDNA, mRNA sequence.
BM065285.1:518-541
CTTTAACAACAGATTGATCTCTATTAGGGG518GTAGTTTAGTGGGCACATCTGATGCCTTCAGAATGGGCTCACCCATGTCAACCC
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:12305499-12305522
CTTTAACAACAGATTGATCTCTATTAGGGG12305499GTAGTTTAGTGGGCACATCTGATGCCTTCAGAATGGGCTCACCCATGTCAACCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/catcagatgtgcccactaaactac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : catcagatgtgcccactaaactac | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.229 | 0.221 | search_plus_done; http://172.18.8.135:50400/match?q=CATCAGATGTGCCCACTAAACTAC&k=0&no_gap=0&offset=0&limit=50
0.285 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGTTTAGTGGGCACATCTGATG&k=0&no_gap=0&offset=0&limit=45
0.287 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).