GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 18:52:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020150117326-A/43: SSR primer derived from apple and use thereof.
LG070142.1:1-22
1CATCAGTCTCTTGCACTGGAAA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:14644840-14644861
CAGTCACACTTCTCTCTCAACTGCTTACTT14644840CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:13141733-13141754
CAGTCACACTTCTCTCTCAACTGCTTACTT13141733CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus domestica genome assembly, chromosome: 14.
OU696690.1:14358744-14358765
CAGTCACACTTCTCTCTCAACTGCTTACTT14358744CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus domestica genome assembly, chromosome: 14.
OU744555.1:14543867-14543888
CAGTCACACTTCTCTCTCAACTGCTTACTT14543867CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus domestica genome assembly, chromosome: 14.
OU744966.1:14653453-14653474
CAGTCACACTTCTCTCTCAACTGCTTACTT14653453CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus domestica genome assembly, chromosome: 14.
OU745004.1:14742030-14742051
CAGTCACACTTCTCTCTCAACTGCTTACTT14742030CATCAGTCTCTTGCACTGGAAAAGATAGAATACAACAGAAGCCTTTCAAGTT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:16158031-16158052
AACTTGAAAGGGTTCTGTTGTATTCTCTCT16158031TTTCCAGTGCAAGAGACTGATGAAGTAAGCAGTTGAGAGAGAAGTGTGACTG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:17841341-17841362
AACTTGAAAGGCTTCTGTTGTATTCTATCT17841341TTTCCAGTGCAAGAGACTGATGAAGTAAGCAGTTGAGAGAGAAGTGTGACTG
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:15878590-15878611
AACTTGAAAGGGTTCTGTTGTATTCTCTCT15878590TTTCCAGTGCAAGAGACTGATGAAGTAAGCAGTTGAGAGAGAAGTGTGACTA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:17927233-17927254
AACTTGAAAGGCTTCTGTTGTATTCTATCT17927233TTTCCAGTGCAAGAGACTGATGAAGTAAGCAGTTGAGAGAGAAGTGTGACTG
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:17422606-17422627
AACTTGAAAGGCTTCTGTTGTATTCTATCT17422606TTTCCAGTGCAAGAGACTGATGAAGTAAGCAGTTGAGAGAGAAGTGTGACTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/catcagtctcttgcactggaaa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : catcagtctcttgcactggaaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.126 | search_plus_done; http://172.18.8.135:50400/match?q=CATCAGTCTCTTGCACTGGAAA&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCCAGTGCAAGAGACTGATG&k=0&no_gap=0&offset=0&limit=43
0.160 | 0.003 | cgi_end;

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