GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:49:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scyliorhinus canicula genome assembly, chromosome: 9.
LR744038.1:14739911-14739928
TCCAAATAAACCCTCCCCTTCATTCAGTTG14739911CCAAAGATGCAGATTGGTACACACTCTCGTTCCTCCTCCTCAACCAAC
Phalacrocorax aristotelis genome assembly, chromosome: 2.
OX451223.1:28255470-28255487
TAGAGCCCAGTTTTCAATGTATTTAAGCGC28255470CCAAAGATGCAGATTGGTAGTTGGCTTAGAGCTGTTGCCTTTCTTGGT
Borostomias antarcticus genome assembly, chromosome: 37.
OX465240.1:581900-581917
AAGGCTTACCCTCTAGAGAGACAGTCAGAT581900CCAAAGATGCAGATTGGTTTGCGGACAGAAGGCCAATGTGGGAGAAGC
JP 2015516143-A/210778: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
LF616407.1:232-249
GAAGCCGTCAACAATATAAAAGACGCCATG232CCAAAGATGCAGATTGGTGCCCCTGTCAGACAGAATATCGATGCAGGT
JP 2017121241-A/210778: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
LZ056738.1:232-249
GAAGCCGTCAACAATATAAAAGACGCCATG232CCAAAGATGCAGATTGGTGCCCCTGTCAGACAGAATATCGATGCAGGT
JP 2019054813-A/210778: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
MD650551.1:232-249
GAAGCCGTCAACAATATAAAAGACGCCATG232CCAAAGATGCAGATTGGTGCCCCTGTCAGACAGAATATCGATGCAGGT
Rattus norvegicus clone CH230-19J4, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC109015.4:94836-94853
AGTTGATGGGAGTAATGAGAGGTTATTGGG94836CCAAAGATGCAGATTGGTGTAGATTTAAGAAGTTCATAAAATGCCATT
Rattus norvegicus clone CH230-181M16, WORKING DRAFT SEQUENCE, 134 unordered pieces.
AC110677.4:241668-241685
AGTTGATGGGAGTAATGAGAGGTTATTGGG241668CCAAAGATGCAGATTGGTGTAGATTTAAGAAGTTCATAAAATGCCATT
Kluyveromyces marxianus DMKU3-1042 DNA, complete genome, chromosome 4.
AP012216.1:65460-65477
CTCTACGCTTACGAATATAGGTGGACACAT65460CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Kluyveromyces marxianus DNA, chromosome 4, complete genome, strain: NBRC 1777.
AP014602.1:87719-87736
CTCTACGCTTACGAATATAGGTAGACACAT87719CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Kluyveromyces marxianus strain FIM1 chromosome 4, partial sequence.
CP015057.1:79750-79767
CTCTACGCTTACGAATATAGGTGGACACAT79750CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-08.
CP023120.1:26364372-26364389
ACTGCCAGAATTTGGGTTAAAAATGTGAAA26364372CCAAAGATGCAGATTGGTGTACTGCCAGAATTTGGAGACATAAGGGTC
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-08.
CP023120.1:26364524-26364541
ACTGCCAGAATTTGGGTTAAAAATGTGAAA26364524CCAAAGATGCAGATTGGTGTACTGCCAGAATTTGGAGACATAAGGGTC
Kluyveromyces marxianus strain NRRL Y-6860 chromosome 4, complete sequence.
CP023459.1:72945-72962
CTCTACGCTTACGAATATAGGTGGACACAT72945CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Kluyveromyces marxianus strain CBS6556 chromosome 4.
CP067321.1:75118-75135
CTCTACGCTTACGAATATAGGTGGACACAT75118CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Kluyveromyces marxianus strain NBRC1777 chromosome 4.
CP067329.1:71161-71178
CTCTACGCTTACGAATATAGGTAGACACAT71161CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Kluyveromyces marxianus strain DMKU3-1042 chromosome 4.
CP118239.1:65818-65835
CTCTACGCTTACGAATATAGGTAGACACAT65818CCAAAGATGCAGATTGGTTAATAATTTGTAGTATTAAAAGTTTAGTAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:482173-482190
AAGAAACCGAGAAAGAAAAACTGGAATTCT482173CCAAAGATGCAGATTGGTTTATATGGTTAGTTTGTGCTTAATTTGCAT
[Candida] saopauloensis strain 19XY460 chromosome 2.
CP138895.1:1131396-1131413
CCGAGCCGGGCTTCAAAGCCAATTGACCCA1131396CCAAAGATGCAGATTGGTCACCCAAACAGCCACTGATAGGCACATTGT
Siphonodentalium dalli isolate Sc116.8C chromosome III.
CP136063.1:178050420-178050437
CAGATGCCGACACGGACACTTCTGAAAACA178050420CCAAAGATGCAGATTGGTAGCTGATCAGCAGTTTACATACACAAGTGC
Dynamena pumila piwi mRNA, complete cds.
MW618098.1:1471-1488
TCCAGAAGAGAGACAGGTTCACTTACCAAG1471CCAAAGATGCAGATTGGTCTAGAGAAACTCGTGGTAAAGAACTTATTA
Oscheius sp. JU1382 genome assembly, chromosome: I.
OW051475.1:8135217-8135234
AGTACCACGAAGTGCAAAATTATTCCAACT8135217CCAAAGATGCAGATTGGTGCTGGATTTGTGGACAGTTCAAAGGAGGTA
Montipora capitata genome assembly, chromosome: 8.
OX421452.1:6349643-6349660
GAGTTTGAATGTACGAATGTGCAGTGGGAA6349643CCAAAGATGCAGATTGGTGGGATATGTTACGCACCAACTGATTTCGGC
Montipora capitata genome assembly, chromosome: 8.
OX421452.1:6399190-6399207
GAGTTTGAATGTACAAATGTACAGTGGGAA6399190CCAAAGATGCAGATTGGTGGGTTATGTTACGCACCAACTGATTTCGGC
Montipora capitata genome assembly, chromosome: 8.
OX421452.1:6445420-6445437
GAGTTTGAATGTACGAATGTGCAGTGGGAA6445420CCAAAGATGCAGATTGGTGGGAGATGTTACGCACCAACTGATTTCGGC
Apodemus sylvaticus genome assembly, chromosome: 15.
OX359312.1:82284163-82284180
AATAACTCCCCAGTGTGCACAGCCAGAAAT82284163ACCAATCTGCATCTTTGGTGGCCACTGTCATCCCAACTGCTGTCCAAG
Plecotus auritus genome assembly, chromosome: 13.
OY734035.1:17620899-17620916
TCTGGAGAGACGCGGTGCTGGGAAGATCAA17620899ACCAATCTGCATCTTTGGAAGTATCTAGATTCTTTCCTTCTCCCTCTG
Pseudochaenichthys georgianus genome assembly, chromosome: 11.
LR792556.1:5059137-5059154
ATAATTATAAAACATATTGTTCTGAAATGG5059137ACCAATCTGCATCTTTGGTATTTTAAGTACGTTTAGAAGCCAATACTG
Raja brachyura genome assembly, chromosome: 11.
OY740791.1:58215620-58215637
AGGAAAATTTATAATGCTAAATTGTAACCT58215620ACCAATCTGCATCTTTGGGATGTGTGAGGATACCAGAGCTTTCAGAGG
Phalacrocorax carbo genome assembly, chromosome: 2.
OY997602.1:140177582-140177599
ACCAAGAAAGGCAACAGCTCTAAGCCAACT140177582ACCAATCTGCATCTTTGGGCGCTTAAATACATTGAAAACTGGGCTCTA
lkg50d03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ073647.1:478-495
ATGCAAATTAAGCACAAACTAACCATATAA478ACCAATCTGCATCTTTGGAGAATTCCAGTTTTTCTTTCTCGGTTTCTT
BOT01-96L11TR BOT01 Brassica oleracea genomic clone BOT01-96L11, genomic survey sequence.
FI745613.1:749-766
ATGCAAATTAAGCACAAACTAACCATATAA749ACCAATCTGCATCTTTGGAGAATTCCAGTTTTTCTTTCTCGGTTTCTT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-03.
CP023115.1:25773845-25773862
GACTCTTATGTCTCCAAATTCTAGCAGTAC25773845ACCAATCTGCATCTTTGGTTTCACCTTTTCAACTCAAGTACTGGCAGT
Gossypioides kirkii chromosome KI_2_4.
CP032245.1:30628447-30628464
TTTAGGATGGCGTGCACTATTGATTCTAGA30628447ACCAATCTGCATCTTTGGACACAAAAGAGAAGAAGCCATATGCCTGTT
Saururus chinensis isolate CL-2023b chromosome 3.
CP141142.1:11424003-11424020
AGCTAAATTTTCATTGATGTAATCCAATAA11424003ACCAATCTGCATCTTTGGATTCTGAACGGGGTTCTGAGTTATTGAATG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41189017-41189034
ATGCAAATTAAGCACAAACTAACCATATAA41189017ACCAATCTGCATCTTTGGAGAATTCCAGTTTTTCTTTCTCGGTTTCTT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50444796-50444813
ATGCAAATTAAGCACAAACTAACCATATAA50444796ACCAATCTGCATCTTTGGAGAATTCCAGTTTTTCTTTCTCGGTTTCTT
Geum urbanum genome assembly, chromosome: 20.
OX327016.1:32622864-32622881
AGCAACTCATACAACAATATACAATACTCC32622864ACCAATCTGCATCTTTGGTCGTGGAATTTAGACATCAAAATATCAGTA
Hecatera dysodea genome assembly, chromosome: 24.
HG995311.1:8530385-8530402
ACCCTTTTCCTAAATATGTTGGGGTTGGCT8530385ACCAATCTGCATCTTTGGGAATGCAACTTAGTACTACCAATATTTTAC
Philereme vetulata genome assembly, chromosome: 11.
OU975428.1:9673268-9673285
TCTTCCATCGACTTTGCCATAACCATATCC9673268ACCAATCTGCATCTTTGGCAAGAAAATGGTCATTTTACACAAAAACTT
Montipora capitata genome assembly, chromosome: 10.
OX421454.1:188959-188976
GATGAAATCTATAATATTTATGCATGACCC188959ACCAATCTGCATCTTTGGTTTCCACGGTACATTCGTACATTCTAACTT
Montipora capitata genome assembly, chromosome: 11.
OX421455.1:29209960-29209977
GATAATTTTTTGATGCATGACATGACCTGT29209960ACCAATCTGCATCTTTGGTTCCCATGGTACATTCATACAAGTGAAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccaaagatgcagattggt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccaaagatgcagattggt | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.273 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAAGATGCAGATTGGT&k=0&no_gap=0&offset=0&limit=50
0.410 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAATCTGCATCTTTGG&k=0&no_gap=0&offset=0&limit=25
0.422 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).