GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 02:14:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS14053B03 KS14 Capsicum annuum cDNA, mRNA sequence.
GD062309.1:377-400
TCACCTTGGCTGGATCGATGACTCCAGCTT377CCACGAGATTCTCATATTTGTCTGTCATCGCGTTATAACCTATCTCCCATTCGG
KS26050G07 KS26 Capsicum annuum cDNA, mRNA sequence.
GD134282.1:408-431
TCACCTTGGCTGGATCGATGACTCCAGCTT408CCACGAGATTCTCATATTTGTCTGTCATCGCGTTATAACCTATCTCCCATTCGG
CS01005F07 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345398.1:427-450
TCACCTTGGCTGGATCGATGACTCCAGCTT427CCACGAGATTCTCATATTTGTCTGTCATCGCGTTATAACCTATCTCCCATTCGG
TSA: Capsicum annuum MGMT_Contig8962, mRNA sequence.
JW059206.1:495-518
TCACCTTGGCTGGATCGATGACTCCAGCTT495CCACGAGATTCTCATATTTGTCTGTCATCGCGTTATAACCTATCTCCCATTCGG
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:274374287-274374310
TCACCTTGGCTGGATCGATGACTCCAGCTT274374287CCACGAGATTCTCATATTTGTCTGTCATCGCGTTATAACCTATCTCCCATTCGG
KS26060F03 KS26 Capsicum annuum cDNA, mRNA sequence.
GD135176.1:570-593
CCGAATGGGAGATAGGTTATAACGCGATGA570CAGACAAATATGAGAATCTCGTGGAAGCTGGAGTCAT
Solanum pinnatisectum cultivar CGN17745 chromosome 11.
CP047563.1:41813631-41813654
CCGAATGGGAGATGGGTTATAACGCGATGA41813631CAGACAAATATGAGAATCTCGTGGATGCTGGAGTCATTGATCCAGCCAAGGTGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:3014470-3014493
CCGAATGGGAGATAGGTTATAACGCGATGA3014470CAGACAAATATGAGAATCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccacgagattctcatatttgtctg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccacgagattctcatatttgtctg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.362 | 0.353 | search_plus_done; http://172.18.8.135:50400/match?q=CCACGAGATTCTCATATTTGTCTG&k=0&no_gap=0&offset=0&limit=50
0.477 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=CAGACAAATATGAGAATCTCGTGG&k=0&no_gap=0&offset=0&limit=45
0.479 | 0.002 | cgi_end;

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