GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:17:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfw2045j11.y1 Mdfw Malus domestica cDNA clone Mdfw2045j11 5', mRNA sequence.
CN996504.1:107-126
CTCGAACTTTGTGTCCCCAACTATCCGAAG107CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAAGTTAAA
Mdfrt3054f19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3054f19 5', mRNA sequence.
CO898741.1:14-33
CAACTATCCGAAG14CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfrt3058b08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3058b08 5', mRNA sequence.
CO902684.1:14-33
CAACTATCCGAAG14CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mddb5024e21.y1 Mddb Malus domestica cDNA clone Mddb5024e21 5', mRNA sequence.
CO903877.1:103-122
CTCGAACTTTGTGTCCCCAACTATCCGAAG103CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdrtp1001N10.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT040217.1:130-149
CTCTCACTTTCTGTCCCCAACTATCCGAAG130CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfwf2084P06.g1 Apple_EST_Mdfwf Malus domestica cDNA 5', mRNA sequence.
GO512162.1:134-153
CTCTCACTTTCTGTCCCCAACTATCCGAAG134CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfbg8016K08.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5', mRNA sequence.
GO518205.1:36-55
CCGTTGCTGTCGGTCCCCAACTATCCGAAG36CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:25538758-25538777
CTCGAACTTTGTGTCCCCAACTATCCGAAG25538758CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:25979159-25979178
CTCGAACTTTGTGTCCCCAACTTTCCGAAG25979159CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:28340862-28340881
CTCTCACTTTCTGTCCCCAACTATCCGAAG28340862CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:27610419-27610438
CTCGAACTTTGTGTCCCCAACTATCCGAAG27610419CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:27389726-27389745
CTCGAACTTTGTGTCCCCAACTATCCGAAG27389726CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:27873641-27873660
CTCTCACTTTCTGTCCCCAACTATCCGAAG27873641CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:27414697-27414716
CTCGAACTTTGTGTCCCCAACCATCCGAAG27414697CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:28157516-28157535
CTCTCACTTTCTGTCCCCAACTATCCGAAG28157516CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:9626616-9626635
ATTTAACTTTTTTCTTATTTGAAAGAAGAA9626616AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:10404078-10404097
ATTTAACTTTTTTCTTATTTGAAAGAAGAA10404078AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACAGAAAGTGAGAG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:10106337-10106356
ATTTAACTTTTTTCTTATTTGAAAGAAGAA10106337AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccacttgcaacgtctccttt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccacttgcaacgtctccttt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.600 | 0.591 | search_plus_done; http://172.18.8.135:50400/match?q=CCACTTGCAACGTCTCCTTT&k=0&no_gap=0&offset=0&limit=50
0.629 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGGAGACGTTGCAAGTGG&k=0&no_gap=0&offset=0&limit=35
0.631 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).