GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 10:02:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jmsf32m13, 5' end.
CJ745809.1:136-159
CTTTTTGTAGCCCACAGCACACCTCCCTGG136CCCCATCCCCCAATATACACTTCTTTGAGTGATTTCTTGAAGAAAAATTGGGTC
Ipomoea nil mRNA, clone: JMFS058D10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY940449.1:276-299
CTTTTTGTAGCCCACAGCACACCTCCCTGG276CCCCATCCCCCAATATACACTTCTTTGAGTGATTTCTTGAAGAAAAATTGGGTC
Ipomoea nil mRNA, clone: JMFS154H03, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY947885.1:310-333
CTTTTTGTAGCCCACAGCACACCTCCCTGG310CCCCATCCCCCAATATACACTTCTTTGAGTGATTTCTTGAAGAAAAATTGGGTC
Ipomoea trifida cultivar NCNSP0306 chromosome 9.
CP025652.1:6927380-6927403
CTTTTTGTAGCCCACACCACACCTCCCAGG6927380CCCCATCCCCCAATATACACTTCTTTGAAGAAAAAAAGGTGGTCTTGGAGTGTT
Ipomoea triloba cultivar NCNSP0323 chromosome 9.
CP025668.1:8289542-8289565
CTTTTTGTAGCCCACACCACACCTCCCAGG8289542CCCCATCCCCCAATATACACTTCTTTGAAGAAAAAAGGTGGTGTTGGAGTGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccccatcccccaatatacacttct
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccccatcccccaatatacacttct | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.547 | 0.539 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCATCCCCCAATATACACTTCT&k=0&no_gap=0&offset=0&limit=50
0.624 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGTGTATATTGGGGGATGGGG&k=0&no_gap=0&offset=0&limit=45
0.624 | 0.000 | cgi_end;

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