GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:55:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS26025G10 KS26 Capsicum annuum cDNA, mRNA sequence.
GD131999.1:170-193
CATACTGTGGACCGAAATTGTTTGTTGCTT170CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
KS26053E05 KS26 Capsicum annuum cDNA, mRNA sequence.
GD134526.1:299-322
CATACTGTGGACCGAAATTGTTTGTTGCTT299CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACATGTT
TSA: Capsicum annuum MGMT_Contig6379, mRNA sequence.
JW056623.1:6293-6316
CATACTGTGGACCGAAATTGTTTGTTGCTT6293CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
TSA: Capsicum annuum MGMT_Contig20096, mRNA sequence.
JW070340.1:4511-4534
CATACTGTGGACCGAAATTGTTTGTTGCTT4511CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
TSA: Capsicum annuum CM_MegaContig_27137 mRNA sequence.
JW104668.1:3808-3831
CATACTGTGGACCGAAATTGTTTGTTGCTT3808CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:11015786-11015809
CATACCGTGGACCGAAATTGTTTGTTGCTT11015786CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:9906550-9906573
CATACCGTGGACCGAAATTGTTTGTTGCTT9906550CCCGGTTTTGATAGTCGTATAAAGTTGCTTCCTGTAACCTACCCGCAACACGTT
BJ03023A11 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911748.1:215-238
AACGTGTTGCGGGTAGGTTACAGGAAGCAA215CTTTATACGACTATCAAAACCGGGAAGCAACAAACAATTTCGGTCCACGGTATG
KS23014C02 KS23 Capsicum annuum cDNA, mRNA sequence.
GD112263.1:162-185
AACGTGTTGCGGGTAGGTTACAGGAAGCAA162CTTTATACGACTATCAAAACCGGGAAGCAACAAACAATTTCGGTCCACAGTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cccggttttgatagtcgtataaag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cccggttttgatagtcgtataaag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.335 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=CCCGGTTTTGATAGTCGTATAAAG&k=0&no_gap=0&offset=0&limit=50
0.517 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTATACGACTATCAAAACCGGG&k=0&no_gap=0&offset=0&limit=43
0.518 | 0.002 | cgi_end;

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