GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:52:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Fragaria x ananassa cultivar Benihoppe chromosome 10.
CP139766.1:2852004-2852021
GTTAACGTCGCTCCGCGTGCCGTGACTACC2852004CCGCGAGATGACAAGTCCGCTCGCGTCCCATTACTACTGCGCGAGCTG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:28179426-28179443
GGCTACCATATATGCAGCCAACAGTCCAGG28179426CCGCGAGATGACAAGTCCCTGCCCAATCCTGGTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:26089733-26089750
GGCCACCATATATGCAGCCAACAGTCCAGG26089733CCGCGAGATGACAAGTCCCTGCCCATTCCTGGTCTCTCTCTCTCTCTC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:27516851-27516868
GGCTACCATATATGCAGCCAACAGTCCCGG27516851CCGCGAGATGACAAGTCCCTGCCCAATCCTGGTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:26783105-26783122
GGCTACCATATATGCAGCCAACAGTCCAGG26783105CCGCGAGATGACAAGTCCCTGCCCAATCCTGGTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:27265460-27265477
GGCCACCATATATGCAGCCAACAGTCCAGG27265460CCGCGAGATGACAAGTCCCTGCCCATTCCTGGTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:27303437-27303454
GGCTACCATATATGCAGCCAACAGTCCCGG27303437CCGCGAGATGACAAGTCCCTGCCCAATCCTGGTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:28609539-28609556
GGCCACCATATATGCAGCCAACAGTCCAGG28609539CCGCGAGATGACAAGTCCCTGCCCATTCCTGGTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:18700625-18700642
GAGAGAGAGAGAGAGACCAGGATTGGGCAG18700625GGACTTGTCATCTCGCGGCCTGGACTGTTGGCTGCATATATGGTAGCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:18024960-18024977
GAGAGAGAGAGAGAGAGCAGGATTGGGCAG18024960GGACTTGTCATCTCGCGGCCTGGACTGTTGGCTGCATATATGGTAGCC
Misopates orontium genome assembly, chromosome: 2.
OX326947.1:30511421-30511438
TGGAGATCGACTCCTCTTTCTGCCTCCCGA30511421GGACTTGTCATCTCGCGGCTCTCTATTCTCAAGGACATACTCGATGAG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:18532417-18532434
GAGAGAGAGAGAGAGACCAGGATTGGGCAG18532417GGACTTGTCATCTCGCGGCCTGGACTGTTGGCTGCATATATGGTAGCC
Cordylochernes scorpioides isolate IN4F17 chromosome 19.
CP092881.1:68998712-68998729
AACATTGTTCTGGGATGACAGAAGGAATGG68998712GGACTTGTCATCTCGCGGTATAAGTAGGCAGTCCTCCTTCTCTTCACA
Cordylochernes scorpioides isolate IN4F17 chromosome 19.
CP092881.1:69012247-69012264
AACATTGTTCTGGGATGACAGAAGGAATGG69012247GGACTTGTCATCTCGCGGTATAAGTAGGCAGTCCTCCTTCCCTTCACA
Cordylochernes scorpioides isolate IN4F17 chromosome 19.
CP092881.1:69023386-69023403
AACATTGTTCTGGGATGACAGAAGGAATGG69023386GGACTTGTCATCTCGCGGTATAAGTAGGCAGTCCTCCTTCTCTTCACA
Cordylochernes scorpioides isolate IN4F17 chromosome 19.
CP092881.1:69034601-69034618
AACATTGTTCTGGGGTGACAGAAGGAATGG69034601GGACTTGTCATCTCGCGGTATAAGTAGGCAGTCCTTCTTCTCTTCACA
Ophion slaviceki genome assembly, chromosome: 8.
OX101790.1:32003981-32003998
TCGCGGGACAGGATTGAGGGACGGTTTCTG32003981GGACTTGTCATCTCGCGGCCGATGAGGTAATCGCAACTTCGACGGGTC
Nycteola revayana genome assembly, chromosome: 19.
OX344857.2:8400120-8400137
TAGCGGTCGTAGCCCAATGACTAGGGCATC8400120GGACTTGTCATCTCGCGGTCGGTTCGATACCCACCCATTGCACTACCG
Ophion costatus genome assembly, chromosome: 5.
OX632360.1:4246008-4246025
TCGCGGGACAGGATTGGGGGACGGTTTCCG4246008GGACTTGTCATCTCGCGGCCGATGAGGTAATCGCAACTTCGACGGGTC
Ophion ellenae genome assembly, chromosome: 8.
OY723392.1:33517034-33517051
TCGCGGGACAGGATTGAGGGACGGTTTCTG33517034GGACTTGTCATCTCGCGGCCGATGAGGTAATCGCAACTTCGACGGGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccgcgagatgacaagtcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccgcgagatgacaagtcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=CCGCGAGATGACAAGTCC&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTTGTCATCTCGCGG&k=0&no_gap=0&offset=0&limit=42
0.136 | 0.008 | cgi_end;

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