GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:16:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_12433.
FX671603.1:1187-1206
AGAGAGAACCCCGTCGTGTTGTTGTAGTCT1187CCGTCTCGGTGGCGGATTCATCTTTCTCGGCGTTGCTGTGGCTTCCCATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3785.
FX771735.1:1167-1186
AGAGAGAACCCCGTCGTGTTGTTGTAGTCT1167CCGTCTCGGTGGCGGATTCATCTTTCTCGGCGTTGCTGTGGCTTCCCATC
TSA: Raphanus sativus RS18795 mRNA sequence.
JT803342.1:1132-1151
AGAGAGAACCCCGTCGTGTTGTTGTAGTCT1132CCGTCTCGGTGGCGGATTCATCTTTCTCGGCGTTGCTATGGCTTCCCATC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:499770-499789
CAGAGAGAGATCCCTGCCGTGTTGTAGCAT499770CCGTCTCGGTGGCGGATTCATCTTTCTCCGCGTTGCTATGGCTTCCCATC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25043754-25043773
AGAGAGAACCCCGTCGTGTTGTTGTAGTCT25043754CCGTCTCGGTGGCGGATTCATCTTTCTCGGCGTTGCTATGGCTTCCCATC
KR 1020200056398-A/3: DOWNY MILDEW RESISTANT CABBAGE AND CULTIVATION METHOD THEREFOR.
LY994989.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
KR 1020200056398-A/24: DOWNY MILDEW RESISTANT CABBAGE AND CULTIVATION METHOD THEREFOR.
LY995010.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
WO 2019050042-A/3: Cabbage having resistance to downy mildew and method for producing the cabbage.
MA886810.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
WO 2019050042-A/24: Cabbage having resistance to downy mildew and method for producing the cabbage.
MA886831.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
Sequence 3 from patent US 11427832.
OO476993.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
Sequence 24 from patent US 11427832.
OO477014.1:116-135
GATGGGAAGCCATAGCAACGCGGAGAAAGA116TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
BN25.065I10F020128 BN25 Brassica napus cDNA clone BN25065I10, mRNA sequence.
CD826901.1:136-155
AATGGGAAGCCATAGCAACGCCGAGAAAGA136TGAATCCGCCACCGAGACGGATGCTACGACACGGCGGGGCTCTCTCTCTG
39RDBRT_UP_008_A06_05APR2004_048 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX270237.1:111-130
AATGGGAAGCGGTAGCAACGCCGAGAAAGA111TGAATCCGCCACCGAGACGGATACTACAACACGGCGGGGCTCTCTCTCTG
Brassica oleracea var. viridis mRNA, clone: KALE-074P05, 5' end sequence.
DK484207.1:127-146
GATGGGAAGCCATAGCAACGCGGAGAAAGA127TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
Brassica oleracea var. viridis mRNA, clone: KALE-082C21, 5' end sequence.
DK486972.1:32-51
GATGGGAAGCCATAGCAACGCGGAGAAAGA32TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
58ACPE48_UP_010_G05_20SEP2004_035 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE417871.1:133-152
AATGGGAAGCCATAGCAACGCCGAGAAAGA133TGAATCCGCCACCGAGACGGATGCTACGACACGGCGGGGCTCTCTCTCTG
BNSCS2CT_UP_144_C11_23APR2007_091 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV026261.1:152-171
GATGGGAAGCCATAGCAACGCGGAGAAAGA152TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
BNSCS3CT_UP_077_E06_04MAY2007_040 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV042599.1:59-78
GATGGGAAGCCATAGCAACGCGGAGAAAGA59TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
RR2CT02TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX757851.1:156-175
TATGGGAAGCCACAGCAACGCCGAGAAAGA156TGAATCCGCCACCGAGACGGATACTACAACAACACGACGGGGTTCTCTCT
13JKBNM2_UP_026_B05_28SEPT2007_045 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR436008.1:44-63
GATGGGAAGCCATAGCAACGCGGAGAAAGA44TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
BOGOY68TR BOGO Brassica oleracea genomic clone BOGOY68, genomic survey sequence.
BH477257.1:39-58
GATGGGAAGCATAGCCAACGCGGAGAAAGA39TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
BOT01-97K22TF BOT01 Brassica oleracea genomic clone BOT01-97K22, genomic survey sequence.
FI747347.1:684-703
GATGGGAAGCCATAGCAACGCGGAGAAAGA684TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGATCTCTCTCTGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69086774-69086793
AATGGGAAGCCATAGCAACGCCGAGAAAGA69086774TGAATCCGCCACCGAGACGGATGCTACGACACGGCGGGGCTCTCTCTCTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53020545-53020564
AATGGGAAGCCATAGCAACGCCGAGAAAGA53020545TGAATCCGCCACCGAGACGGATGCTACGACACGGCGGGGCTCTCTCTCTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41171429-41171448
GATGGGAAGCCATAGCAACGCGGAGAAAGA41171429TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50427880-50427899
GATGGGAAGCCATAGCAACGCGGAGAAAGA50427880TGAATCCGCCACCGAGACGGATGCTACAACACGGCAGGGATCTCTCTCTG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:18989196-18989215
GATGGGAAGCCATAGCAACGCCGAGAAAGA18989196TGAATCCGCCACCGAGACGGAGACTACAACAACACGACGGGGTTCTCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ccgtctcggtggcggattca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ccgtctcggtggcggattca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTCTCGGTGGCGGATTCA&k=0&no_gap=0&offset=0&limit=50
1.186 | 1.005 | search_minus_done; http://172.18.8.135:50400/match?q=TGAATCCGCCACCGAGACGG&k=0&no_gap=0&offset=0&limit=45
1.200 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).