GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:24:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:487384-487405
GATTTGTCTCCCTGATCTCCCGCTGCTTTC487384CCTAGTCACCAGTACAGGCCACCAGAGACTCCTGCGATGCTCCCTCTTCTCC
c10_12na_1j.s 12na Brassica napus cDNA clone c10_12na_1j 5, mRNA sequence.
GT081304.1:268-289
GGAGAAGAGGGAGCATCGCAGGAGTCTCTG268GTGGCCTGTACTGGTGACTAGGGAAAGCAGCGGGAGATCAGGGAGACAAATC
BOT01-53O21TF BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI720919.1:225-246
GGAGAAGAGGGAGCATCGCAGGAGTCTCTG225GTGGCCTGTACTGGTGACTAGGGAAAGTAGCGGGAGATCAGGGAGA
BOT01-104H17TF BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI753042.1:554-575
GGAGAAGAGGGAGCATCGCAGGAGTCTCTG554GTGGCCTGTACTGGTGACTAGGGAAAGCAGCGGGAGATCAGGGAGACAAATC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41183811-41183832
GGAGAAGAGGGAGCATCGCAGGAGTCTCTG41183811GTGGCCTGTACTGGTGACTAGGGAAAGCAGCGGGAGATCAGGGAGACAAATC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50439620-50439641
GGAGAAGAGGGAGCATCGCAGGAGTCTCTG50439620GTGGCCTGTACTGGTGACTAGGGAAAGCAGCGGGAGATCAGGGAGACAAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cctagtcaccagtacaggccac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cctagtcaccagtacaggccac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=CCTAGTCACCAGTACAGGCCAC&k=0&no_gap=0&offset=0&limit=50
0.289 | 0.180 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGCCTGTACTGGTGACTAGG&k=0&no_gap=0&offset=0&limit=49
0.293 | 0.003 | cgi_end;

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