GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:48:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 87 from patent US 7462706.
GC688885.1:1421-1447
CCGGCTACACGCACACAAGTACATAATACA1421CCTAGTTAAAACATATATCCATAGAGCAATTGAGTTTGGACTATGCGCTTCATTGGA
Hordeum vulgare cultivar Dairokkaku ZCCT-Ha (VRN2) gene, partial cds.
AY485977.1:1421-1447
CCGGCTACACGCACACAAGTACATAATACA1421CCTAGTTAAAACATATATCCATAGAGCAATTGAGTTTGGACTATGCGCTTCATTGGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828135.1:653566033-653566059
CCGGCTACACGCACACAAGTACATAATACA653566033CCTAGTTAAAACATATATCCATAGAGCAATTGAGTTTGGACTATGCGCTTCATTGGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828149.2:618158305-618158331
CCGGCTACACGCACACAAGTACATAATACA618158305CCTAGTTAAAACATATATCCATAGAGCAATTGAGTTTGGACTATGCGCTTCATTGGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR812264.1:642830406-642830432
TCCAATGAAGCGCATAGTCCAAACTCAATT642830406GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828111.1:591677199-591677225
TCCAATGAAGCGCATAGTCCAAACTCAATT591677199GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828276.1:639684100-639684126
TCCAATGAAGCGCATAGTCCAAACTCAATT639684100GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX459933.1:604670587-604670613
TCCAATGAAGCGCATAGTCCAAACTCAATT604670587GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX459933.1:604723711-604723737
TCCAATGAAGCGCATAGTCCAAACTCAATT604723711GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX459933.1:604734485-604734511
TCCAATGAAGCGCATAGTCCAAACTCAATT604734485GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460015.1:605385907-605385933
TCCAATGAAGCGCATAGTCCAAACTCAATT605385907GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460022.1:598475390-598475416
TCCAATGAAGCGCATAGTCCAAACTCAATT598475390GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460071.1:605574809-605574835
TCCAATGAAGCGCATAGTCCAAACTCAATT605574809GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460098.1:603317766-603317792
TCCAATGAAGCGCATAGTCCAAACTCAATT603317766GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460106.1:608638367-608638393
TCCAATGAAGCGCATAGTCCAAACTCAATT608638367GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460169.1:600460528-600460554
TCCAATGAAGCGCATAGTCCAAACTCAATT600460528GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460204.1:604657853-604657879
TCCAATGAAGCGCATAGTCCAAACTCAATT604657853GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460211.1:601914600-601914626
TCCAATGAAGCGCATAGTCCAAACTCAATT601914600GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460295.1:607022357-607022383
TCCAATGAAGCGCATAGTCCAAACTCAATT607022357GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX638780.1:606728744-606728770
TCCAATGAAGCGCATAGTCCAAACTCAATT606728744GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare genome assembly, chromosome: 4H.
OX638787.1:601580027-601580053
TCCAATGAAGCGCATAGTCCAAACTCAATT601580027GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX638829.1:606763654-606763680
TCCAATGAAGCGCATAGTCCAAACTCAATT606763654GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX638878.1:600653794-600653820
TCCAATGAAGCGCATAGTCCAAACTCAATT600653794GCTCTATGGATATATGTTTTAACTAGGTGTATTATGTACTTGTGTGCGTGTAGCCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cctagttaaaacatatatccatagagc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cctagttaaaacatatatccatagagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.158 | 0.149 | search_plus_done; http://172.18.8.135:50400/match?q=CCTAGTTAAAACATATATCCATAGAGC&k=0&no_gap=0&offset=0&limit=50
0.246 | 0.088 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCTATGGATATATGTTTTAACTAGG&k=0&no_gap=0&offset=0&limit=46
0.259 | 0.013 | cgi_end;

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