GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:31:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Astatotilapia calliptera genome assembly, chromosome: 16.
LS420034.2:26976543-26976560
GATGTGCTAAAGAAGGTAAAGTATAGCAGC26976543CCTCGCTAAATGTGCGAGGGTACAGTATGAAAATCTCTCATGCATGTT
Neolamprologus multifasciatus genome assembly, chromosome: 16.
OY755032.1:26557131-26557148
GATGTGCTAAAGAAGGTAAAGTATAGCAGC26557131CCTCGCTAAATGTGCGAGGGTACAGTATGAAAATCTCTCAGGCATGTT
BOT01-19M21TF BOT01 Brassica oleracea genomic clone BOT01-19M21, genomic survey sequence.
FI687118.1:369-386
CTCGTAAACTCGAGAAAAGCCAAAGACTTC369CCTCGCTAAATGTGCGAGGAGAGCGATTATTGTATCTATGATTTATTC
Emmelina monodactyla genome assembly, chromosome: 3.
OU745303.1:10991412-10991429
TCCCTGCAATTGTTTTACTAGTCATTTATA10991412CCTCGCTAAATGTGCGAGGTGCGAGCGCAGGCGCCGGCTCGCGAGCTG
Hofmannophila pseudospretella genome assembly, chromosome: 2.
OX376313.1:4559168-4559185
TGTTGATAAAGTCGGGACTGTTGGTTTTGT4559168CCTCGCTAAATGTGCGAGAAAGGAACGCAAAGAAACACGACGATAACG
BOHUX23TR BO_2_3_KB Brassica oleracea genomic clone BOHUX23, genomic survey sequence.
BH701548.1:199-216
GAATAAATCATAGATACAATAATCGCTCTC199CTCGCACATTTAGCGAGGGAAGTCTTTGGCTTTTCTCGAGTTTACGAG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53495426-53495443
GAATAAATCATAGATACAATAATCGCTCTC53495426CTCGCACATTTAGCGAGGGAAGTCTTTGGCTTTTCTCGAGTTTACGAG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41662549-41662566
GAATAAATCATAGATACAATAATCGCTCTC41662549CTCGCACATTTAGCGAGGGAAGTCTTTGGCTTTTCTCGAGTTTACGAG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50900528-50900545
GAATAAATCATAGATACAATAATCGCTCTC50900528CTCGCACATTTAGCGAGGGAAGTCTTTGGCTTTTCTCGAGTTTACGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cctcgctaaatgtgcgag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cctcgctaaatgtgcgag | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.394 | 0.386 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCGCTAAATGTGCGAG&k=0&no_gap=0&offset=0&limit=50
0.491 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=CTCGCACATTTAGCGAGG&k=0&no_gap=0&offset=0&limit=45
0.493 | 0.003 | cgi_end;

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