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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:35:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS08025D02 KS08 Capsicum annuum cDNA, mRNA sequence.
BM068521.1:291-314
CAACTGGTACGCTAATGTAATCAGCTTGTT291CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS11013B08 KS11 Capsicum annuum cDNA, mRNA sequence.
CA520508.1:354-377
CAACTGGTACGCTAATGTAATCAGCTTGTC354CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAG
KS14026B04 KS14 Capsicum annuum cDNA, mRNA sequence.
GD059814.1:343-366
CAACTGGTACGCTAATGTAATCAGCTTGTT343CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS14027C08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD059920.1:343-366
CAACTGGTACGCTAATGTAATCAGCTTGTT343CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS14041E09 KS14 Capsicum annuum cDNA, mRNA sequence.
GD061233.1:343-366
CAACTGGTACGCTAATGTAATCAGCTTGTT343CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS14062A04 KS14 Capsicum annuum cDNA, mRNA sequence.
GD063139.1:343-366
CAACTGGTACGCTAATGTAATCAGCTTGTT343CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS18004A01 KS18 Capsicum annuum cDNA, mRNA sequence.
GD081807.1:353-376
CAACTGGTACGCTAATGTAATCAGCTTGTT353CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS18008C09 KS18 Capsicum annuum cDNA, mRNA sequence.
GD082210.1:353-376
CAACTGGTACGCTAATGTAATCAGCTTGTT353CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS18009G04 KS18 Capsicum annuum cDNA, mRNA sequence.
GD082347.1:353-376
CAACTGGTACGCTAATGTAATCAGCTTGTT353CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS21023H22 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101312.1:287-310
CAACTGGTACGCTAATGTAATCAGCTTGTT287CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22001F04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105119.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22006C02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105551.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22020C12 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106863.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22041A01 KS22 Capsicum annuum cDNA, mRNA sequence.
GD108776.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22046E02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109287.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22051B02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109722.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22054E06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110044.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS22060F04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110611.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS23047C08 KS23 Capsicum annuum cDNA, mRNA sequence.
GD115393.1:348-371
CAACTGGTACGCTAATGTAATCAGCTTGTT348CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS23070A09 KS23 Capsicum annuum cDNA, mRNA sequence.
GD117406.1:351-374
CAACTGGTACGCTAATGTAATCAGCTTGTT351CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS23074E02 KS23 Capsicum annuum cDNA, mRNA sequence.
GD117829.1:351-374
CAACTGGTACGCTAATGTAATCAGCTTGTT351CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS24008H09 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118673.1:344-367
CAACTGGTACGCTAATGTAATCAGCTTGTT344CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS24012C05 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118987.1:346-369
CAACTGGTACGCTAATGTAATCAGCTTGTT346CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS24014C01 KS24 Capsicum annuum cDNA, mRNA sequence.
GD119171.1:349-372
CAACTGGTACGCTAATGTAATCAGCTTGTT349CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS24057G10 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123216.1:357-380
CAACTGGTACGCTAATGTAATCAGCTTGTT357CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KS24063B10 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123729.1:362-385
CAACTGGTACGCTAATGTAATCAGCTTGTT362CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
TSA: Capsicum annuum MGMT_Contig9570, mRNA sequence.
JW059814.1:499-522
CAACTGGTACGCTAATGTAATCAGCTTGTT499CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
TSA: Capsicum annuum MGMT_Contig10525, mRNA sequence.
JW060769.1:328-351
CCACTGATACGCTAATGTAATCAGCTTGTT328CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGTAGCAA
TSA: Capsicum annuum MGMT_Contig23621, mRNA sequence.
JW073865.1:687-710
CAACTGGTACGCTAATGTAATCAGCTTGTT687CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286784850-286784873
CAACTGGTACGCTAATGTAATCAGCTTGTT286784850CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286816633-286816656
CCACTGATACGCTAATGTAATCAGCTTGTT286816633CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGTAGCAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286847182-286847205
CAACTGGTACGCTAATGTAATCAGCTTGTT286847182CCTTGGTAAGTTTGGTGAGCTTAGCTCCGAGCTTTCCAAGGTGAAGGGCAGCAA
KR 1020160038243-A/16: Single nucleotide polymorphism marker set for marker-assisted breeding in Capsicum and uses thereof.
LG144723.1:97-120
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG97CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KR 1020160038243-A/312: Single nucleotide polymorphism marker set for marker-assisted breeding in Capsicum and uses thereof.
LG145019.1:60-83
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG60CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
Sequence 7727 from patent US 10760088.
MV637466.1:1444-1467
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG1444CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
Sequence 7727 from patent US 11111499.
MY429349.1:1444-1467
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG1444CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS14053F07 KS14 Capsicum annuum cDNA, mRNA sequence.
GD062360.1:658-681
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG658CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS14056H10 KS14 Capsicum annuum cDNA, mRNA sequence.
GD062667.1:460-483
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG460CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS16049D11 KS16 Capsicum annuum cDNA, mRNA sequence.
GD074048.1:489-512
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG489CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS17061C02 KS17 Capsicum annuum cDNA, mRNA sequence.
GD081203.1:221-244
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG221CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18011A11 KS18 Capsicum annuum cDNA, mRNA sequence.
GD082470.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18015D01 KS18 Capsicum annuum cDNA, mRNA sequence.
GD082870.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18018D06 KS18 Capsicum annuum cDNA, mRNA sequence.
GD083153.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18030G10 KS18 Capsicum annuum cDNA, mRNA sequence.
GD084312.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18048B02 KS18 Capsicum annuum cDNA, mRNA sequence.
GD085902.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18059C02 KS18 Capsicum annuum cDNA, mRNA sequence.
GD086915.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS18059E09 KS18 Capsicum annuum cDNA, mRNA sequence.
GD086946.1:359-382
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG359CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS19023G11 KS19 Capsicum annuum cDNA, mRNA sequence.
GD089489.1:398-421
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG398CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22003B05 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105261.1:248-271
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG248CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22003F04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105308.1:394-417
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG394CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22003F06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105310.1:497-520
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG497CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22012G03 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106155.1:329-352
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG329CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22019C03 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106761.1:272-295
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG272CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
KS22031F03 KS22 Capsicum annuum cDNA, mRNA sequence.
GD107897.1:329-352
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG329CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
TSA: Capsicum annuum MGMT_Contig44150 mRNA sequence.
JW094394.1:1473-1496
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG1473CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:5286336-5286359
TTGCTACCCTTCACCTTGGAAAGCTCGGAG5286336CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTATCAGTGG
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:5318134-5318157
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG5318134CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG
Capsicum annuum S-adenosyl-homocysteine hydrolase protein (SAHH) mRNA, complete cds.
JQ219042.1:1435-1458
TTGCTGCCCTTCACCTTGGAAAGCTCGGAG1435CTAAGCTCACCAAACTTACCAAGGAACAAGCTGATTACATTAGCGTACCAGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccttggtaagtttggtgagcttag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccttggtaagtttggtgagcttag | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.985 | 1.976 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGGTAAGTTTGGTGAGCTTAG&k=0&no_gap=0&offset=0&limit=50
3.796 | 1.811 | search_minus_done; http://172.18.8.135:50400/match?q=CTAAGCTCACCAAACTTACCAAGG&k=0&no_gap=0&offset=0&limit=18
3.812 | 0.017 | cgi_end;

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