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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:31:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1594 from Patent WO2014060542.
JC521039.1:15-33
CTGCGGGCGGGCAA15CGAGCGCCTGACGGACGATTTTCTCCGTTCGCAGGGCTTTGACGGCACG
Sequence 1594 from Patent WO2014060538.
JC524797.1:15-33
CTGCGGGCGGGCAA15CGAGCGCCTGACGGACGATTTTCTCCGTTCGCAGGGCTTTGACGGCACG
MAG: Enhydrobacter sp. isolate bin_2004 chromosome, complete genome.
CP126889.1:834707-834725
TTCTCGGGCGCCGGGCGGACTCGAGCAAGC834707CGAGCGCCTGACGGACGATCGCCTTCTGCATGTCCCGGCGCCATGGATG
Hordeum vulgare EST clone S0001100137H04F3.
AJ433549.1:46-64
AGCTACTCACAGCTCACAAGGCAGTAAGCC46CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare EST clone S0001100178A04F1.
AJ479246.1:56-74
AGCTACTCACAGCTCACAAGGCAGTAAGCC56CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEb0010B03f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0010B03f, mRNA sequence.
BE216277.3:50-68
AGCTACTCACAGCTCACAAGGCAGTAAGCC50CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEb0010B06f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0010B06f, mRNA sequence.
BE216280.3:52-70
AGCTACTCACAGCTCACAAGGCAGTAAGCC52CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEb0015D14f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0015D14f, mRNA sequence.
BE558207.3:71-89
AGCTACTCACAGCTCACAAGGCAGTAAGCC71CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEb0015N04f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0015N04f, mRNA sequence.
BE558251.3:90-108
AGCTACTCACAGCTCACAAGGCAGTAAGCC90CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEb0017I13f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0017I13f, mRNA sequence.
BE558402.3:86-104
AGCTACTCACAGCTCACAAGGCAGTAAGCC86CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0002C08f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0002C08f, mRNA sequence.
BF261757.3:49-67
AGCTACTCACAGCTCACAAGGCAGTTTTCC49CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0004E18f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0004E18f, mRNA sequence.
BF262546.3:53-71
AGCTACTCACAGCTCACAAGGCAGTAAGCC53CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0004H18f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0004H18f, mRNA sequence.
BF262618.3:51-69
AGCTACTCACAGCTCACAAGGCAGTAAGCC51CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0006I08f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0006I08f, mRNA sequence.
BF263351.3:52-70
AGCTACTCACAGCTCACAAGGCAGTAAGCC52CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0007I23f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0007I23f, mRNA sequence.
BF263748.3:48-66
AGCTACTCACAGCTCACAAGGCAGTAAGCC48CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0007I24f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0007I24f, mRNA sequence.
BF263749.3:48-66
AGCTACTCACAGCTCACAAGGCAGTAAGCC48CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HV_CEa0008G02f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0008G02f, mRNA sequence.
BF264043.3:52-70
AGCTACTCACAGCTCACAAGGCAGTAAGCC52CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEb0009D06f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0009D06f, mRNA sequence.
BF630409.3:50-68
AGCTACTCACAGCTCACAAGGCAGTAAGCC50CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEl0003N17f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0003N17f, mRNA sequence.
BI947133.1:48-66
AGCTACTCACAGCTCACAAGGCAGTAAGCC48CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEm0001K06f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEm0001K06f, mRNA sequence.
BI951612.1:61-79
AGCTACTCACAGCTCACAAGGCAGTAAGCC61CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEm0012F07f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEm0012F07f, mRNA sequence.
BI953371.1:53-71
AGCTACTCACAGCTCACAAGGCAGTAAGCC53CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
EBro08_SQ004_I17_R root, 3 week, drought-stressed, cv Optic, EBro08 Hordeum vulgare subsp. vulgare cDNA clone EBro08_SQ004_I17 5', mRNA sequence.
BM370543.1:71-89
AGCTACTCACAGCTCACAAGGCAGTAAGCC71CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
EBem09_SQ002_P16_R embryo, 1 Day germination, no treatment, cv Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone EBem09_SQ002_P16 5', mRNA sequence.
BM444047.2:49-67
AGCTACTCACAGCTCACAAGGCAGTAAGCC49CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
EBem09_SQ006_P06_R embryo, 1 Day germination, no treatment, cv Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone EBem09_SQ006_P06 5', mRNA sequence.
BM444935.1:59-77
AGCTACTCACAGCTCACAAGGCAGTAAGCC59CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HO06J21S HO Hordeum vulgare cDNA clone HO06J21 5-PRIME, mRNA sequence.
CD057887.1:54-72
AGCTACTCACAGCTCACAAGGCAGTAAGCC54CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1042C01, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK599162.1:78-96
AGCTACTCACAGCTCACAAGGCAGTAAGCC78CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1055C09, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK603841.1:76-94
AGCTACTCACAGCTCACAAGGCAGTAAGCC76CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1063G07, Normalized barley full-length cDNA library from seedling shoot at low temperature, 5' end sequence.
DK606856.1:78-96
AGCTACTCACAGCTCACAAGGCAGTAAGCC78CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2002H18, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK638795.1:78-96
AGCTACTCACAGCTCACAAGGCAGTAAGCC78CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2045C15, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK653687.1:76-94
AGCTACTCACAGCTCACAAGGCAGTAAGCC76CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3118G05, Normalized barley full-length cDNA library from malt, 5' end sequence.
DK732680.1:78-96
AGCTACTCACAGCTCACAAGGCAGTAAGCC78CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
GCA004B09x GCA Hordeum vulgare cDNA clone GCA004B09 3-PRIME, mRNA sequence.
DN155544.1:118-136
AGCTACTCACAGCTCACAAGGCAGTAAGCC118CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HDP32G16w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32G16, mRNA sequence.
EX594436.1:70-88
AGCTACTCACAGCTCACAAGGCAGTAAGCC70CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEb0006K10f2 Hordeum vulgare seedling shoot (dehydration stress) cDNA library HVSMEb (HVcDNA0002)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0011C24r, mRNA sequence.
GH212355.1:52-70
AGCTACTCACAGCTCACAAGGCAGTAAGCC52CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
HVSMEb0009D06f2 Hordeum vulgare seedling shoot (dehydration stress) cDNA library HVSMEb (HVcDNA0002)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0012O21r, mRNA sequence.
GH212772.1:50-68
AGCTACTCACAGCTCACAAGGCAGTAAGCC50CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cultivar Morex clone HVVMRXALLhA0243L10, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC249697.1:19523-19541
AGCTACTCACAGCTCACAAGGCAGTAAGCC19523CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0410D12, *** SEQUENCING IN PROGRESS ***, 67 unordered pieces.
AC262368.1:6904-6922
AGCTACTCACAGCTCACAAGGCAGTAAGCC6904CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf30m09, mRNA sequence.
AK249305.1:78-96
AGCTACTCACAGCTCACAAGGCAGTAAGCC78CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1029F10.
AK356049.1:966-984
AGCTACTCACAGCTCACAAGGCAGTAAGCC966CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR824638.1:570443118-570443136
AGCTACTCACAGCTCACAAGGCAGTAAGCC570443118CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Triticum aestivum genome assembly, chromosome: 4B.
LR862560.1:237252586-237252604
TGCAGCTGATGATGGGCTCAATGTGCTCCT237252586CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
LR865468.1:234090096-234090114
TGCAGCTGATGATGGGCTCAATGTGCTCCT234090096CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
LR865489.1:234055644-234055662
TGCAGCTGATGATGGGCTCAATGTGCTCCT234055644CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
LR865749.1:250698804-250698822
TGCAGCTGATGATGGGCTCAATGTGCTCCT250698804CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
LR877319.1:246135497-246135515
TGCAGCTGATGATGGGCTCAATGTGCTCCT246135497CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OU015687.1:498427294-498427312
AGCTACTCACAGCTCACAAGGCAGTAAGCC498427294CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Triticum aestivum genome assembly, chromosome: 4B.
OU963882.1:244132621-244132639
TGCAGCTGATGATGGGCTCAATGTGCTCCT244132621CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
OV100747.1:243317348-243317366
TGCAGCTGATGATGGGCTCAATGTGCTCCT243317348CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Triticum aestivum genome assembly, chromosome: 4B.
OW530320.1:243317348-243317366
TGCAGCTGATGATGGGCTCAATGTGCTCCT243317348CGAGCGCCTGACGGACGATGCCCTCCGGCAAGCTATCAAGCGCCTCCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX459983.1:563684620-563684638
AGCTACTCACAGCTCACAAGGCAGTAAGCC563684620CGAGCGCCTGACGGACGATGGCGTCCTTCGCTAGAGCTGCCCGTTTCAT
Pseudoduganella umbonata strain DSMZ 26121 chromosome, complete genome.
CP040017.1:2887291-2887309
CCTGGTGCGCCGGATCGTGGCCGGCGCGGC2887291CGAGCGCCTGACGGACGATGGCCTGCTGATCGTCGAGATCGGCAACGAG
Bradyrhizobium sp. 195 plasmid p195_1, complete sequence.
CP082162.1:590357-590375
CGTCGATCCCCTCGCGGGATCCTACTATGT590357CGAGCGCCTGACGGACGATCTCGTCAAGGCTGCCTGGCAACTCATGGAG
Bradyrhizobium xenonodulans strain 14AB chromosome, complete genome.
CP089391.1:3196279-3196297
CGTCGATCCCCTCGCGGGATCCTACTATGT3196279CGAGCGCCTGACGGACGATCTCGTCAAGGCTGCCTGGCAACTCATGGAG
Streptomyces sp. Mut1 chromosome, complete genome.
CP120997.1:3760980-3760998
GATGTTCCATCCGCTCCGGGTCAGCGGGAT3760980CGAGCGCCTGACGGACGATTCGGTGGCCGTCACCTTCGCCGTGCCGCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cgagcgcctgacggacgat
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cgagcgcctgacggacgat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.335 | 1.326 | search_plus_done; http://172.18.8.135:50400/match?q=CGAGCGCCTGACGGACGAT&k=0&no_gap=0&offset=0&limit=50
1.493 | 0.158 | search_minus_done; http://172.18.8.135:50400/match?q=ATCGTCCGTCAGGCGCTCG&k=0&no_gap=0&offset=0&limit=0
1.493 | 0.000 | cgi_end;

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