GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:46:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig2546, mRNA sequence.
JW052790.1:1057-1080
ACCACGGTCCTTATCATTTTGAGCATCATT1057CGCATCCATATTCTTTAGGAGATCCAGTGTCATAGTTTTCGATTCATCGGGAGT
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:173839726-173839749
ACCACGGTCCTTATCATTTTGAGCATCATT173839726CGCATCCATATTCTTTAGGAGATCCAGTGTCATAGTTTTCGATTCATCGGGAGT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:145025304-145025327
ACCACGGTCCTTATCATTTTGAGCATCATT145025304CGCATCCATATTCTTTAGGAGATCCAGTGTCATAGTTTTCGATTCATCAGGAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:185632769-185632792
ACCACGGTCCTTATCATTTTGAGCATCATT185632769CGCATCCATATTCTTTAGGAGATCCAGTGTCATAGTTTTCGATTCATCGGGAGT
Petunia x hybrida EST, clone drs13P0001D19_F.ab1 2007-08-10.
FN031205.1:417-440
ACCCCTGATGAAGCGAAAACTATGACACTG417GATCTCCTAAAGAATATGGATGCGAATGATGCTCCGAATAACAAGGACCGCGGT
Petunia x hybrida EST, clone drs13P0012L15_F.ab1 2007-08-10.
FN035307.1:8-31
ACGCGGG8GATCTCCTAAAGAATATGGATGCGAATGATGCTCAGAATAACAAGGACCGCGGT
KS13022A05 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054000.1:522-545
ACTCCCGATGAATCGAAAACTATGACACTG522GATCTCCTAAAGAATATGGATGCGAATGATGCTCAAAATGATAAGGACCGTGGT
KS20041E10 KS20 Capsicum annuum cDNA, mRNA sequence.
GD097120.1:374-397
ACTCCCGATGAATCGAAAACTATGACACTG374GATCTCCTAAAGAATATGGATGCGAATGATGCTCAAAATGATAAGGACCGTGGT
KS24010D04 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118809.1:112-135
ACTCCCGATGAATCGAAAACTATGACACTG112GATCTCCTAAAGAATATGGATGCGAATGATGCTCAAAATGATAAGGACCGTGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cgcatccatattctttaggagatc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cgcatccatattctttaggagatc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=CGCATCCATATTCTTTAGGAGATC&k=0&no_gap=0&offset=0&limit=50
0.558 | 0.444 | search_minus_done; http://172.18.8.135:50400/match?q=GATCTCCTAAAGAATATGGATGCG&k=0&no_gap=0&offset=0&limit=46
0.561 | 0.004 | cgi_end;

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