GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 12:02:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

010914AVBC012083PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012083, mRNA sequence.
CN940980.1:331-350
AATCGGCTCCCCCGGCGCCAGCGGCTACGG331CTCAAAGAGTACAGCCGAACAAGTCACCGACGCCTCCTCCCGATCTCCGC
011001AVBC091087PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC091087, mRNA sequence.
CN944140.1:331-350
AATCGGCTCCCCCGGCGCCAGCGGCTACGG331CTCAAAGAGTACAGCCGAACAAGTCACCGACGCCTCCCCCGATCTCCGCC
Malus domestica genome assembly, chromosome: 6.
OU744996.1:20407191-20407210
AATCGGCTCCCCCGGCGCCAGCGGCTACGG20407191CTCAAAGAGTACAGCCGAACAAGTCACCGACGCCTCCCCCGATCTCCGCC
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:20277729-20277748
AATCGGCTCCCCCGGCGCCAGCGGCTACGG20277729CTCAAAGAGTACAGCCGAACAAGTCACCGACGCCTCCCCCGATCTCCGCC
Paenibacillus guangzhouensis strain KCTC 33171 chromosome, complete genome.
CP045293.1:6050678-6050697
AAGCTCTCGTATTTGATCGATTACAATGTG6050678GTTCGGCTGTACTCTTTGAGTGAACAGGATTCTTCCTTGTCGCCAGCGAC
Roseivirga spongicola strain OXR-11 chromosome, complete genome.
CP139724.1:2894213-2894232
TTGATGAAATCAAGACCGAATAAATAGTTT2894213GTTCGGCTGTACTCTTTGAGTAGGAGTGTTGCCTTATAGCCAAATGAGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctcaaagagtacagccgaac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctcaaagagtacagccgaac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.187 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=CTCAAAGAGTACAGCCGAAC&k=0&no_gap=0&offset=0&limit=50
0.217 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCGGCTGTACTCTTTGAG&k=0&no_gap=0&offset=0&limit=46
0.218 | 0.001 | cgi_end;

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