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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 14:40:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

HO06J21w HO Hordeum vulgare cDNA clone HO06J21 3-PRIME, mRNA sequence.
CK567399.1:50-68
TTTATTTGTGAACCGAACAACCATTCATAT50CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1029F10, Normalized barley full-length cDNA library from seedling shoot in normal or dark, 3' end sequence.
DK753337.1:1-19
1CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3118G05, Normalized barley full-length cDNA library from malt, 3' end sequence.
DK876613.1:146-164
TTTATTTGTGAACCGAACAACCATTCATAT146CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
HVSMEb0009D06r2 Hordeum vulgare seedling shoot (dehydration stress) cDNA library HVSMEb (HVcDNA0002)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0012O21f, mRNA sequence.
GH212773.1:20-38
TTTTTTTTTTTTTTTTTAT20CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0243L10, *** SEQUENCING IN PROGRESS ***, 68 unordered pieces.
AC251369.2:72426-72444
TTTATTTGTGAACCGAACAACCATTCATAT72426CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
HG994380.1:459864651-459864669
TTTATTTGTGAACCGAACAACCATTCATAT459864651CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR722622.1:500750816-500750834
TTTATTTGTGAACCGAACAACCATTCATAT500750816CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR812976.1:500750816-500750834
TTTATTTGTGAACCGAACAACCATTCATAT500750816CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828093.1:492548509-492548527
TTTATTTGTGAACCGAACAACCATTCATAT492548509CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828100.1:489991318-489991336
TTTATTTGTGAACCGAACAACCATTCATAT489991318CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828107.2:506366110-506366128
TTTATTTGTGAACCGAACAACCATTCATAT506366110CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828121.1:484639802-484639820
TTTATTTGTGAACCGAACAACCATTCATAT484639802CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828138.1:520877612-520877630
TTTATTTGTGAACCGAACAACCATTCATAT520877612CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828152.2:497685609-497685627
TTTATTTGTGAACCGAACAACCATTCATAT497685609CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828159.1:490279368-490279386
TTTATTTGTGAACCGAACAACCATTCATAT490279368CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828166.1:517254388-517254406
TTTATTTGTGAACCGAACAACCATTCATAT517254388CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828173.1:498542376-498542394
TTTATTTGTGAACCGAACAACCATTCATAT498542376CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828180.1:495590416-495590434
TTTATTTGTGAACCGAACAACCATTCATAT495590416CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828187.1:501416905-501416923
TTTATTTGTGAACCGAACAACCATTCATAT501416905CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828194.1:505716531-505716549
TTTATTTGTGAACCGAACAACCATTCATAT505716531CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828272.1:493399021-493399039
TTTATTTGTGAACCGAACAACCATTCATAT493399021CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828279.1:519019546-519019564
TTTATTTGTGAACCGAACAACCATTCATAT519019546CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR865401.1:480537293-480537311
TTTATTTGTGAACCGAACAACCATTCATAT480537293CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR890102.1:497713337-497713355
TTTATTTGTGAACCGAACAACCATTCATAT497713337CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OU015707.1:506867643-506867661
TTTATTTGTGAACCGAACAACCATTCATAT506867643CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OU701469.1:457753068-457753086
TTTATTTGTGAACCGAACAACCATTCATAT457753068CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX459908.1:491886776-491886794
TTTATTTGTGAACCGAACAACCATTCATAT491886776CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX459922.1:496933695-496933713
TTTATTTGTGAACCGAACAACCATTCATAT496933695CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX459976.1:504135832-504135850
TTTATTTGTGAACCGAACAACCATTCATAT504135832CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX459990.1:500239061-500239079
TTTATTTGTGAACCGAACAACCATTCATAT500239061CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX459997.1:500857524-500857542
TTTATTTGTGAACCGAACAACCATTCATAT500857524CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX460004.1:497062544-497062562
TTTATTTGTGAACCGAACAACCATTCATAT497062544CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460011.1:493198611-493198629
TTTATTTGTGAACCGAACAACCATTCATAT493198611CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460018.1:496004051-496004069
TTTATTTGTGAACCGAACAACCATTCATAT496004051CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460032.1:502212850-502212868
TTTATTTGTGAACCGAACAACCATTCATAT502212850CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX460039.1:494901548-494901566
TTTATTTGTGAACCGAACAACCATTCATAT494901548CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460053.1:493372580-493372598
TTTATTTGTGAACCGAACAACCATTCATAT493372580CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460060.1:497782536-497782554
TTTATTTGTGAACCGAACAACCATTCATAT497782536CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460066.1:494749835-494749853
TTTATTTGTGAACCGAACAACCATTCATAT494749835CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460081.1:497252486-497252504
TTTATTTGTGAACCGAACAACCATTCATAT497252486CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460088.1:491573832-491573850
TTTATTTGTGAACCGAACAACCATTCATAT491573832CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX460095.1:501651379-501651397
TTTATTTGTGAACCGAACAACCATTCATAT501651379CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460102.1:495173997-495174015
TTTATTTGTGAACCGAACAACCATTCATAT495173997CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460123.1:496885584-496885602
TTTATTTGTGAACCGAACAACCATTCATAT496885584CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460130.1:493430714-493430732
TTTATTTGTGAACCGAACAACCATTCATAT493430714CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460144.1:502244328-502244346
TTTATTTGTGAACCGAACAACCATTCATAT502244328CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460151.1:496287066-496287084
TTTATTTGTGAACCGAACAACCATTCATAT496287066CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460165.1:490504410-490504428
TTTATTTGTGAACCGAACAACCATTCATAT490504410CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460179.1:495124517-495124535
TTTATTTGTGAACCGAACAACCATTCATAT495124517CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460186.1:491737811-491737829
TTTATTTGTGAACCGAACAACCATTCATAT491737811CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460193.1:498217584-498217602
TTTATTTGTGAACCGAACAACCATTCATAT498217584CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460200.1:497617649-497617667
TTTATTTGTGAACCGAACAACCATTCATAT497617649CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460221.1:498200398-498200416
TTTATTTGTGAACCGAACAACCATTCATAT498200398CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460228.1:493348079-493348097
TTTATTTGTGAACCGAACAACCATTCATAT493348079CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460235.1:500472175-500472193
TTTATTTGTGAACCGAACAACCATTCATAT500472175CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460242.1:492488943-492488961
TTTATTTGTGAACCGAACAACCATTCATAT492488943CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460249.1:493181743-493181761
TTTATTTGTGAACCGAACAACCATTCATAT493181743CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460256.1:494205847-494205865
TTTATTTGTGAACCGAACAACCATTCATAT494205847CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460270.1:499157268-499157286
TTTATTTGTGAACCGAACAACCATTCATAT499157268CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460277.1:499048178-499048196
TTTATTTGTGAACCGAACAACCATTCATAT499048178CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460291.1:497416917-497416935
TTTATTTGTGAACCGAACAACCATTCATAT497416917CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX460305.1:497074136-497074154
TTTATTTGTGAACCGAACAACCATTCATAT497074136CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590740.1:495692898-495692916
TTTATTTGTGAACCGAACAACCATTCATAT495692898CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590747.1:496787416-496787434
TTTATTTGTGAACCGAACAACCATTCATAT496787416CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590754.1:495868218-495868236
TTTATTTGTGAACCGAACAACCATTCATAT495868218CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590768.1:493824339-493824357
TTTATTTGTGAACCGAACAACCATTCATAT493824339CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638659.1:502888936-502888954
TTTATTTGTGAACCGAACAACCATTCATAT502888936CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638748.1:495856187-495856205
TTTATTTGTGAACCGAACAACCATTCATAT495856187CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638755.1:499807646-499807664
TTTATTTGTGAACCGAACAACCATTCATAT499807646CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638762.1:493156928-493156946
TTTATTTGTGAACCGAACAACCATTCATAT493156928CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638769.1:495701172-495701190
TTTATTTGTGAACCGAACAACCATTCATAT495701172CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638776.1:493542096-493542114
TTTATTTGTGAACCGAACAACCATTCATAT493542096CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638790.1:504871580-504871598
TTTATTTGTGAACCGAACAACCATTCATAT504871580CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
OX638797.1:494770140-494770158
TTTATTTGTGAACCGAACAACCATTCATAT494770140CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638804.1:494204485-494204503
TTTATTTGTGAACCGAACAACCATTCATAT494204485CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638811.1:491165113-491165131
TTTATTTGTGAACCGAACAACCATTCATAT491165113CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638818.1:504776614-504776632
TTTATTTGTGAACCGAACAACCATTCATAT504776614CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA
Hordeum vulgare genome assembly, chromosome: 7H.
OX638825.1:497335749-497335767
TTTATTTGTGAACCGAACAACCATTCATAT497335749CTCACGGCCCAGACATAGCCAATTTTATTCAGAGTAGTAAAACATGCAA

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