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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 04:53:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:25640973-25640992
ATGTCCTTTACTCCTCACTCTTCTCTTACA25640973CTCCCCGGCTCCTATTCTACTATTACGTACTCTCATCGGGCCCCACCATT
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:26160908-26160927
ATGTCTTTTCCTGGTCACTCTTCTCTTACA26160908CTCCCCGGCTCCTATTCTACTATTATGTACTCTCCATCGGGCTCCACCTT
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:25431860-25431879
ATGTCCTTTACTGCTCACTCTTCTCTTACA25431860CTCCCCGGCTCCTATTCTACTATTACGTACTCTCATCGGGCCCCACCATT
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:26299548-26299567
ATGTCCTTTACTGCTCACTCTTCTCTTACA26299548CTCCCCGGCTCCTATTCTACTATTACGTACTCTCATCGGGCCCCACCATT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:9684280-9684299
AAGGTGGAGCCCGATGGAGAGTACATAATA9684280GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACCAGGAAAAGACAT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:8431493-8431512
ATAGGGAACGAGAGTGGAGAGTACGTAGTA8431493GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGAGGAGGAAAAGACAT
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:9544556-9544575
AAGGTGGAGCCCGATGGAGAGTATGTAATA9544556GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACGAGGAAAAGACAT
Malus domestica genome assembly, chromosome: 9.
OU696685.1:9587076-9587095
AAGGTGGAGCCCGATGGAGAGTACATAATA9587076GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACCAGGAAAAGACAT
Malus domestica genome assembly, chromosome: 9.
OU744550.1:9711580-9711599
AAGGTGGAGCCCGATGGAGAGTACGTAATA9711580GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACGAGGAAAAGACAT
Malus domestica genome assembly, chromosome: 9.
OU744961.1:9683125-9683144
AAGGTGGAGCCCGATGGAGAGTACATAATA9683125GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACCAGGAAAAGACAT
Malus domestica genome assembly, chromosome: 9.
OU744999.1:9222734-9222753
AAGGTGGAGCCCGATGGAGAGTACATAATA9222734GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACCAGGAAAAGACAT
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:9413669-9413688
AAGGTGGAGCCCGATGGAGAGTACATAATA9413669GTAGAATAGGAGCCGGGGAGTGTAAGAGAAGAGTGACCAGGAAAAGACAT
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:7397553-7397572
ATAGGGAAGGAGAGTGGAGAGTACGTAGTA7397553GTAGAATAGGAGCCGGGGAGTGTAAAAGGAGTGAGGAGGAAAAGACATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctccccggctcctattctac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctccccggctcctattctac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCCCGGCTCCTATTCTAC&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGAATAGGAGCCGGGGAG&k=0&no_gap=0&offset=0&limit=46
0.124 | 0.006 | cgi_end;

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