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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:08:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene12596_XinShao mRNA sequence.
JR607595.1:513-532
CTTCTTCTTCTTCTTCCTCCTCCTTTCTAC513CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCTCTCCTCCCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:24152739-24152758
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24152739CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:25013886-25013905
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC25013886CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:23186659-23186678
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC23186659CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:23731169-23731188
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC23731169CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:24854656-24854675
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24854656CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:24316970-24316989
TCTTCTTCTTCTTCCTCCTCTTGATTCTGC24316970CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCCCTCCTCCCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:23080915-23080934
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC23080915CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTATCTCTCTCTCTCTCT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:26009726-26009745
TTTTCTTCTTCTTCCTCCTCTTGATTCTGC26009726CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCCCTCCTCCCTCTCT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:24753810-24753829
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24753810CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus domestica genome assembly, chromosome: 5.
OU696681.1:25136762-25136781
TTTTCTTCTTCTTCCTCCTCTTGATTCTGC25136762CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCCCTCCTCCCTCTCT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:24431859-24431878
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24431859CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCTCTCCTCTA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:24813405-24813424
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24813405CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus domestica genome assembly, chromosome: 5.
OU744957.1:26045542-26045561
TTTTCTTCTTCTTCCTCCTCTTGATTCTGC26045542CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCCCTCCTCCCTCTCT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:25550009-25550028
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC25550009CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:27004796-27004815
TTTTCTTCTTCTTCCTCCTCTTGATTCTGC27004796CTCCTCCAAGCTTCAACCACTAAAATGATATTTCTCCCTCCTCCCTCTCT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:24465763-24465782
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC24465763CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:23254667-23254686
CTTCCTTTTCCTCTTCCTCTTGGATTCTAC23254667CTCCTCCAAGCTTCAACCACTAAAAGGGTGCTCTCTCCCCCCTCTCCTCT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:16365622-16365641
CTTCTTTTCCCTCTTGCTCTTGGATTCTAC16365622CTCCTCCAAGCTTCAACCACTAAAATGATGAACAAAAGGGCTCTCTCCCC
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:981069423-981069442
ACAAATCTCCAAGCTCCAAGCTCCAAGAAC981069423CTCCTCCAAGCTTCAACCACCAACTAGAGAAGAGAAAGAGTAAGAACAAC
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:666176869-666176888
CACAATCTCCAAGCTCCAAGCTCCAAGAAC666176869CTCCTCCAAGCTTCAACCACCAACTAGAGAAGAAGAAAGCAACTGCAGCA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:19443866-19443885
AGAGAGGGAGGAGGGAGAAATATCATTTTA19443866GTGGTTGAAGCTTGGAGGAGGCAGAATCAAGAGGAGGAAGAAGAAGAAAA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:19301764-19301783
GGGAGGGAGGAGGGGAGAAATATCATTTTA19301764GTGGTTGAAGCTTGGAGGAGGCAGAATCAAGAGGAGGAAGAAGAAGAAGA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:20628845-20628864
AGAGAGGGAGGAGGGAGAAATATCATTTTA20628845GTGGTTGAAGCTTGGAGGAGGCAGAATCAAGAGGAGGAAGAAGAAGAAAA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:20548302-20548321
AGAGAGGGAGGAGGGAGAAATATCATTTTA20548302GTGGTTGAAGCTTGGAGGAGGCAGAATCAAGAGGAGGAAGAAGAAGAAGA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:15568510-15568529
AGAGAGGGAGGAGAGAGAAATATCATTTTA15568510GTGGTTGAAGCTTGGAGGAGGTAGAAAGGAGAAAGAAGAAGAAGAAGAAG
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:1511763165-1511763184
CATGTTCTTGCTTCTTCTCTCCTCTTGTTG1511763165GTGGTTGAAGCTTGGAGGAGGTTCTTGGTGCTTGCAGGTTGGAGAATTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ctcctccaagcttcaaccac
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ctcctccaagcttcaaccac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.187 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCTCCAAGCTTCAACCAC&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.106 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGTTGAAGCTTGGAGGAG&k=0&no_gap=0&offset=0&limit=29
0.297 | 0.004 | cgi_end;

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