GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:19:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JKBNM5_T7_014_C08_30JUN2004_060 JKBNM5 Brassica napus cDNA 3', mRNA sequence.
ES271992.1:364-382
AAGGTGCTGGGTTCTTGACCGTCCCGCCTT364CTCGTCCTAGACGACCGTTAACCTCTGCGGAAATCATGAGGCAGCAAAT
BNAPO4GH_T3_021_C12_20JULY2007_092 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR460472.1:44-62
AAGGTGCTGGGTTCTTGACCGTCCCGCCTT44CTCGTCCTAGACGACCGTTAACCTCTGCGGAAATCATGAGGCAGCAAAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40714849-40714867
AAGGTGCTGGGTTCTTGACCGTCCCGCCTT40714849CTCGTCCTAGACGACCGTTAACCTCTGCGGAAATCATGAGGCAGCAAAT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49992796-49992814
AAGGTGCTGGGTTCTTGACCGTCCCGCCTT49992796CTCGTCCTAGACGACCGTTAACCTCTGCGGAAATCATGAGGCAGCAAAT
Thlaspi arvense genome assembly, chromosome: 1.
OU466857.2:64215314-64215332
CCGGAGCTGTGTTCTTGACGGTCCCGCCTT64215314CTCGTCCTAGACGACCGTTAACCTCTGCGGAAATCATGAGGCAACAAAT
BoT01-162C6-R BOTO1 Brassica oleracea genomic clone 162C6, genomic survey sequence.
KG699578.1:781-799
TCATTTGCTGCCTCATGATTTCGCAGAGTT781AACGGTCGTCTAGGACGAGAAGGC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:966642-966660
ATTTGCTGCCTCATGATTTCCGCAGAGGTT966642AACGGTCGTCTAGGACGAGAAGGCGGGACGGTCAAGAACCCAGCACCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctcgtcctagacgaccgtt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctcgtcctagacgaccgtt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.336 | 0.328 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGTCCTAGACGACCGTT&k=0&no_gap=0&offset=0&limit=50
0.419 | 0.083 | search_minus_done; http://172.18.8.135:50400/match?q=AACGGTCGTCTAGGACGAG&k=0&no_gap=0&offset=0&limit=45
0.420 | 0.001 | cgi_end;

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