GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:43:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Furcifer pardalis isolate Fpa_1 chromosome 2.
CP126891.1:12982371-12982388
CTTCTGCATTGCACCATGACAACCACACTA12982371CTGATCCACTTGCACAAGTCACTTTCTAGTCCTGAGGGTGGCCCATGA
Furcifer pardalis isolate Fpa_1 chromosome 3.
CP126892.1:86404482-86404499
ATCTGCCTTCCACATCGCAGCGTGACACCA86404482CTGATCCACTTGCACAAGTCACTTTCTGGTCCTGAGCCCTTTTGGCAC
Anabas testudineus genome assembly, chromosome: 14.
LR132054.1:10511746-10511763
TTGTTATCCGATGTGTTCTTTGACAAGACA10511746CTGATCCACTTGCACAAGATGGTTAGCCTAACACCTTGCATGGTAGCT
Valencia hispanica genome assembly, chromosome: 16.
OY747715.1:5302601-5302618
AAGAAATTGGTCATGGTTTTGTTAAGCTGC5302601CTGATCCACTTGCACAAGACTCTCAGGAGCCAAGATTTTAAGAGTTTA
Tricholoma matsutake DNA, chromosome 6, complete sequence.
AP026543.1:2019690-2019707
AAGACCTTCTGGGATGGACAGAAATGGTGA2019690CTGATCCACTTGCACAAGAAAATTGATTATCCACTGACAAAAGACATC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40814386-40814403
TTTTTTTTTCAGACTAGGACTCTGCTCAAC40814386CTGATCCACTTGCACAAGAAATGAGAAACTTTGATGAACAAAAAGAAG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50090818-50090835
AATTTTTTTCAGACTAGGACTCTGTTCAAC50090818CTGATCCACTTGCACAAGAAATGAGAAACTTTGATGAACAAAAAGAAG
Pulicaria dysenterica genome assembly, chromosome: 5.
OX359292.1:37321902-37321919
ACTGTTTCTCACAAAACATTACTAACCATG37321902CTGATCCACTTGCACAAGACGCTACAGTACCCTATTGGTCCAGGCTTT
Scutellaria minor genome assembly, chromosome: 4.
OX940728.1:30916464-30916481
TCTTGAATCCCTTTCTTGAGAGAACCAACT30916464CTGATCCACTTGCACAAGAAACCCGAATATGACGGTAAGTCCTTAGTC
Triglochin maritima genome assembly, chromosome: 24.
OY821793.1:17862605-17862622
CCGTCTGACCGAAAACTTCCAGAGACTCCT17862605CTGATCCACTTGCACAAGCACAACCGGTCAACCGCCACAAGGCATCGT
Ascidia mentula genome assembly, chromosome: 3.
OX387199.1:274547-274564
TAACAGTTTCCGACAATGTTCCGGTAGTTA274547CTGATCCACTTGCACAAGTCAACGAGCTTGCTAAGTTTGCTACAGTAT
Melieria crassipennis genome assembly, chromosome: 3.
OY764963.1:65190224-65190241
TTGACGAGAGACCGTCCAGCGAAAACACGT65190224CTGATCCACTTGCACAAGTCGGGATGACTCCCGACTGCCAGAATTCAG
Dichetophora obliterata genome assembly, chromosome: 1.
OY986435.1:308575946-308575963
ATATATTTGGTGATTTACTTAAAAAAGTTT308575946CTGATCCACTTGCACAAGAGTGCTTTATAGGCAAAACTGCAAAAACTT
Dichetophora obliterata genome assembly, chromosome: 1.
OY986435.1:308582859-308582876
ATATATTTGGTGATTTACTTAAAAAAGTTT308582859CTGATCCACTTGCACAAGAGTGCTTTATAGGCAAAACTGCAAAAACTT
Rhinatrema bivittatum genome assembly, chromosome: 3.
LR584389.1:46312465-46312482
CATTTTTTTTTTTTAATGTTTTTTCTTTAC46312465CTTGTGCAAGTGGATCAGGTTAGGGAAATGGATGTTCAATTTTACAAG
Rhinatrema bivittatum genome assembly, chromosome: 4.
LR584390.1:282398012-282398029
CCTGCATTGTTGGGATATCATCCCAAAATC282398012CTTGTGCAAGTGGATCAGGAGGTGGCATTATATAGATATTTTCTGCTT
Pelobates cultripes genome assembly, chromosome: 02.
OW240913.1:214080546-214080563
TAGGATCACCCCTCCTCTTTTTGGATAACG214080546CTTGTGCAAGTGGATCAGCATTAATGTAGTCTGATCTGGTATACATAC
Raja brachyura genome assembly, chromosome: 13.
OY740793.1:14478400-14478417
GATGAACAACAGCCTAATGTCAGTGTTCAT14478400CTTGTGCAAGTGGATCAGTGCAGAATGGAAAGCCAGTGAGACCTGCAT
TSA: Lygodium japonicum RNA, contig: isotig22356_gene=isogroup08399.
FX967428.1:273-290
CTCAATGGTGCACGCCTCTCTCCATCCAGG273CTTGTGCAAGTGGATCAGGGGACCTTTCTACGGATCCAATTGACGCCA
1093015756470 Global-Ocean-Sampling_GS-36-01-01-2P2KB marine metagenome genomic clone 1061002587043 3', genomic survey sequence.
ER563074.1:140-157
CTAACTCAGTATTTTCTAATTCATTTGGTT140CTTGTGCAAGTGGATCAGCGACTGCGACTTTGAGTATTACAAATAATG
BOT01-112O12TR BOT01 Brassica oleracea genomic clone BOT01-112O12, genomic survey sequence.
FI761377.1:124-141
CTTCTTTTTGTTCATCAAAGTTTCTCATTT124CTTGTGCAAGTGGATCAGGTTGAACAGAGTCCTAGTCTGAAAAAAATT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:868167-868184
CTTCTTTTTGTTCATCAAAGTTTCTCATTT868167CTTGTGCAAGTGGATCAGGTTGAACAGAGTCCTAGTCTGAAAAAAAAA
Perizoma affinitatum genome assembly, chromosome: 14.
OY560198.1:8788898-8788915
TTACAACAACTATTGTAAGATACAATTGCC8788898CTTGTGCAAGTGGATCAGTTGGATCAGCCCTTTGGAAGATCTTCCTCT
Dysidea avara genome assembly, chromosome: 9.
OY787654.2:7604154-7604171
TAGTATCTCAATGAATTCTGGTCTTTTCTT7604154CTTGTGCAAGTGGATCAGTTCCAAAGCATATTGACAAGAGATTTTATG
Sepia lycidas genome assembly, chromosome: 13.
OZ010583.1:12437191-12437208
TGTCCTGCAGGTCTCCGGATTCAAACCCAA12437191CTTGTGCAAGTGGATCAGCCTCCTATATCGCTCCTCCAGTGCGGCGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctgatccacttgcacaag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctgatccacttgcacaag | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.120 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=CTGATCCACTTGCACAAG&k=0&no_gap=0&offset=0&limit=50
0.247 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGTGCAAGTGGATCAG&k=0&no_gap=0&offset=0&limit=36
0.253 | 0.007 | cgi_end;

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