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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 10:35:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3 from patent US 6455762.
AR232939.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 3 from patent US 6831208.
AR616370.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 3 from patent US 6969784.
AR774020.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 14054 from Patent EP2096177.
HB881379.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29665 from Patent EP2096177.
HB896990.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29727 from Patent EP2096177.
HB897052.1:139-165
CCAGATATAACCATCTCGAACCACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 14054 from Patent EP2199304.
HC938788.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29665 from Patent EP2199304.
HC954399.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29727 from Patent EP2199304.
HC954461.1:139-165
CCAGATATAACCATCTCGAACCACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 14054 from patent US 8541208.
HJ431501.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29665 from patent US 8541208.
HJ439231.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Sequence 29727 from patent US 8541208.
HJ439262.1:139-165
CCAGATATAACCATCTCGAACCACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
F126P02Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence.
BI139187.1:133-159
CCAGATATAACCATCTCGAACCACCTCCCT133CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGCTT
E05_69-86_09.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoides cDNA, mRNA sequence.
CX176122.1:231-257
CCAGATATAACCATCTCGAACCACCTCCCT231CTGCACGCATACTGCTTTGAAAACCTCTCTGACTTCTCAGATAGGACATGCTTGATT
WS01231.BR_A11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_A11 5', mRNA sequence.
DT474157.1:170-196
CCAGATATAACCATCTCGAACCACCTCCCT170CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
MTUNUL1.P45.G05 NUL Populus fremontii x Populus angustifolia cDNA, mRNA sequence.
DV465983.2:159-185
CCAGATATAACCATCTCGAACCACCTCCCT159CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremuloides clone Pt4CL2 4-coumarate:CoA ligase mRNA, complete cds.
AF041050.1:139-165
CCAGACATAACCATCTCGAACGACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus balsamifera subsp. trichocarpa x Populus deltoides 4-coumarate:CoA ligase 4 mRNA, complete cds.
AF283553.1:139-165
CCAGATATAACCATCTCGAACCACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus trichocarpa clone WS01231_A11 unknown mRNA.
EF147433.1:170-196
CCAGATATAACCATCTCGAACCACCTCCCT170CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tomentosa 4-coumarate: coenzyme A ligase 2 (4CL2) mRNA, complete cds.
JN937655.1:136-162
CCAGATATAACTATCTCGAACCACCTCCCT136CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tomentosa clone Ptom.019G049500 4-coumarate--CoA ligase family protein 4 mRNA, complete cds.
KU573765.1:139-165
CCAGATATAACTATCTCGAACCACCTCCCT139CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G03b 4CL4 gene, partial cds.
KX447890.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G03d 4CL4 gene, partial cds.
KX447891.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G14b 4CL4 gene, partial cds.
KX447892.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate 16b 4CL4 gene, partial cds.
KX447894.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate 16c 4CL4 gene, partial cds.
KX447895.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G24a 4CL4 gene, partial cds.
KX447896.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G24b 4CL4 gene, partial cds.
KX447897.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G31a 4CL4 gene, partial cds.
KX447898.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate 31b 4CL4 gene, partial cds.
KX447899.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G43a 4CL4 gene, partial cds.
KX447900.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G43c 4CL4 gene, partial cds.
KX447901.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G54a 4CL4 gene, partial cds.
KX447902.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G54b 4CL4 gene, partial cds.
KX447903.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G84a 4CL4 gene, partial cds.
KX447904.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate 84b 4CL4 gene, partial cds.
KX447905.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G85d 4CL4 gene, partial cds.
KX447906.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate 95b 4CL4 gene, partial cds.
KX447907.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G95c 4CL4 gene, partial cds.
KX447908.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G114a 4CL4 gene, partial cds.
KX447911.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G114b 4CL4 gene, partial cds.
KX447912.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT
Populus tremula isolate G85b 4CL4 gene, partial cds.
KX447913.1:120-146
CCAGACATAACCATCTCGAACGACCTCCCT120CTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctgcacgcatactgctttgaaaacctc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctgcacgcatactgctttgaaaacctc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.827 | 0.819 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCACGCATACTGCTTTGAAAACCTC&k=0&no_gap=0&offset=0&limit=50
0.936 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTTTTCAAAGCAGTATGCGTGCAG&k=0&no_gap=0&offset=0&limit=8
0.936 | 0.000 | cgi_end;

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