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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:15:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cyprinus carpio clone 912417 microsatellite sequence.
JN779854.1:509-528
CGTATTATGATGAAGGGTTATGCAGATGCT509CTGGTTTGTTTTCCTCCAGCATGACGCGAGACGCAGGATCCGAACCGGCC
Mdfrt3040j23.y3 Mdfrt Malus domestica cDNA clone Mdfrt3040j23 5', mRNA sequence.
CO868261.1:64-83
TAGGGTAGCAGCAGATGGTTGTGGACACAG64CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
010718ABBA001870HT (ABBA) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBA001870, mRNA sequence.
EB140726.1:586-605
TAGGGTAGCAGCAGATGGTTGTGGACACAG586CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
TSA: Pyrus communis mRNA, contig: lc1945.
FX610532.1:520-539
AATAGGGTAGCAGCAGGTGATTGTGGACAG520CTGGTTTGTTTTCCTCCAGCCACCAAAAACAGTACTCATATATATATATA
TSA: Pyrus communis mRNA, contig: lc26455.
FX634788.1:285-304
AATAGGGTAGCAGCAGGTGATTGTGGACAG285CTGGTTTGTTTTCCTCCAGCCACCAAACACAGTACTCATATATATATATA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:22610069-22610088
TAGGGTAGCACCAGATGGTTGTGGACACAG22610069CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:23038309-23038328
TAGGGTAGCAGCAGATGGTTGTGGACACAG23038309CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:22729416-22729435
TAGGGTAGCAGCAGATGGTTGTGGACACAG22729416CTGGTTTGTTTTCCTCCAGCCCCCCAAACATGTATGCACCTTCTTTAGTT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:21283942-21283961
TAGGGTAGCAGCAGATGGTTGTGGACACAG21283942CTGGTTTGTTTTCCTCCAGCCCCCCAAACACAGTACTCACATGTATGCAC
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:22395198-22395217
TAGGGTAGCAGCAGATGGTTGTGGACACAG22395198CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Malus domestica genome assembly, chromosome: 12.
OU696688.1:22369609-22369628
TAGGGTAGCAGCAGATGGTTGTGGACACAG22369609CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Malus domestica genome assembly, chromosome: 12.
OU744553.1:22524602-22524621
TAGGGTAGCAGCAGATGGTTGTGGACACAG22524602CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Malus domestica genome assembly, chromosome: 12.
OU744964.1:22003376-22003395
TAGGGTAGCAGCAGATGGTTGTGGACACAG22003376CTGGTTTGTTTTCCTCCAGCCCCCCAAACATAGTACTCACATGTATGCAC
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:34915061-34915080
AACAGGGTAGCAGCAGTTGGTTGTGGACAG34915061CTGGTTTGTTTTCCTCCAGCCCCCAAAACACAGTACTCATATATATATAT
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:14452485-14452504
AATAGGGTAGCAGCAGGTGATTGTGGACAG14452485CTGGTTTGTTTTCCTCCAGCCCCCAAACACAGTACTCATATATATAAATA
Flavobacterium sp. M31R6 chromosome, complete genome.
CP054141.1:513383-513402
ATTTTCAAATCAAGCTCTGTTCCTAAATAG513383CTGGTTTGTTTTCCTCCAGCACCATTAGATAAAGAGTTTGCCGATTCAAA
Lipophrys pholis genome assembly, chromosome: 8.
OY726540.1:6886370-6886389
GCCAACGTTTTGTATCTCTGAAAGAGAACT6886370GCTGGAGGAAAACAAACCAGAAGCTTTTTCCTGAGAAGAAGTCAACTTCT
Mdfwf2085H20_e20613.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|
GO547944.1:241-260
GTGCATACATGTGAGTACTATGTTTGGGGG241GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGCTGCTACCCTA
Mdfrs3136J10_e7581.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|C
GO567555.1:282-301
GTGCATACATGTGAGTACTATGTTTGGGGG282GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGCTGCTACCCTA
TSA: Pyrus x bretschneideri Unigene40951_XinShao mRNA sequence.
JR632611.1:83-102
TATATATATATATGAGTACTGTGTTTGGGG83GCTGGAGGAAAACAAACCAGCTGTCCACAATCACCTGCTGCTACCCTATT
Cicer arietinum chromosome Ca2.
CP040767.1:28673981-28674000
TTGAAACCCTAATTTGTAAAGATAACTCAG28673981GCTGGAGGAAAACAAACCAGACAGAACCAAAAAGGATAAGCGGCGCATCC
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:9678412-9678431
GTGCATACATGTGAGTACTATGTTTGGGGG9678412GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGGTGCTACTCTA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:9479736-9479755
GTGCATACATGTGAGTACTATGTTTGGGGG9479736GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGCTGCTACCCTA
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:9550807-9550826
GTGCATACATGTGAGTACTATGTTTGGGGG9550807GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGGTGCTACCCTA
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:7380289-7380308
GTGCATATATATGAGTACTGTGTTTGGGGG7380289GCTGGAGGAAAACAAACCAGCTGTGTCCACAACCATCTGCTGCTACCCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ctggtttgttttcctccagc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ctggtttgttttcctccagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=CTGGTTTGTTTTCCTCCAGC&k=0&no_gap=0&offset=0&limit=50
0.438 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGGAGGAAAACAAACCAG&k=0&no_gap=0&offset=0&limit=34
0.444 | 0.006 | cgi_end;

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