GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 17:38:30, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:32588080-32588102
AGTTGATGAAGCATGATACAAAAAACGAAT32588080CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:34990069-34990091
AGTTGATGAAGCATGATACAAAAAACGAAT34990069CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus domestica cultivar Red Fuji chromosome 2.
CP147794.1:34790104-34790126
AGTTGATGAAGCATGATACAAAAAACGAAT34790104CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus domestica cultivar Red Fuji chromosome 2.
CP147819.1:35033441-35033463
AGTTGATGAAGCATGATACAAAAAACGAAT35033441CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACATAGAGAGAGAGAGAG
Tripolium pannonicum genome assembly, chromosome: 6.
OZ219255.1:73840269-73840291
CTGCTAAGGCCGCAGCGGCTGAGCCTGGTC73840269CTTCAAGTTCAGCATCAAGACAAGAGGCTTCAGGTGATCAATCAAGTCTTCTC
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:3472477-3472499
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472477TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar WA 38 chromosome 2B.
CP165685.1:3654261-3654283
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3654261TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar WA 38 chromosome 2A.
CP165702.1:3719246-3719268
CTCTCTCTCTCTCTATGTTTACTACTAGTA3719246TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar Golden Delicious chromosome 02.
CP168766.1:3436240-3436262
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3436240TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar Golden Delicious chromosome 02.
CP168783.1:3717308-3717330
CTCTCTCTCTCTCTATGTTTACTACTAGTA3717308TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:3621895-3621917
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3621895TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:3472413-3472435
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472413TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:3701233-3701255
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3701233TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:3710091-3710113
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3710091TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:3472319-3472341
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472319TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cttcaagttcagcatcaagacaa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cttcaagttcagcatcaagacaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.147 | 0.139 | search_plus_done; http://172.18.8.135:50800/match?q=CTTCAAGTTCAGCATCAAGACAA&k=0&no_gap=0&offset=0&limit=50
0.231 | 0.083 | search_minus_done; http://172.18.8.135:50800/match?q=TTGTCTTGATGCTGAACTTGAAG&k=0&no_gap=0&offset=0&limit=45
0.237 | 0.006 | cgi_end;

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