GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:53:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Squalius cephalus genome assembly, chromosome: 21.
OX439267.1:28678696-28678715
GATCAATATTGTCTTTGCTAATATGATTCT28678696CTTGTAAGTTCAGCATCCACCTTCTCTGTACACTACACTACTTCCAGATT
BOGHI33TR BOGH Brassica oleracea genomic clone BOGHI33, genomic survey sequence.
BH519892.1:263-282
GGAGATGCAGTGGAGGAGAGCCGAAAAGAT263CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG
BOGLZ51TF BOGL Brassica oleracea genomic clone BOGLZ51, genomic survey sequence.
BH596499.1:81-100
GGAGATGCGGTGGAGGAGAGCCGACCAGAT81CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG
BOT01-6D7TF BOT01 Brassica oleracea genomic clone BOT01-6D7, genomic survey sequence.
FI690323.1:257-276
GGAGATGCAGTGGAGGAGAGCCGAAAAGAT257CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:42193158-42193177
GGAGATGCGGTGGAGGAGAGCCGACCAGAT42193158CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3109538-3109557
GGAGATGCGGTGGAGGAGAGCCGACCAGAT3109538CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:42304238-42304257
GGAGATGCGGTGGAGGAGAGCCGACCAGAT42304238CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:8216547-8216566
GGAGATGCGGTGGAGGAGAGCCGACCAGAT8216547CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:35424455-35424474
GGAGATGCGGTGGAGGAGAGCCGACCAGAT35424455CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:43559294-43559313
GGATATGCGGTGGAGGAGAGCCGACCAAAT43559294CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGATAAG
Brassica rapa genome, scaffold: A02.
LR031573.1:30725861-30725880
GGAGATGCGGTGGAGGAGAGCCGACCAGAT30725861CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:22632-22651
GGAGATGCTGTGGAGGAGAGCCGACCAGAT22632CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:74669-74688
GGAGATGCTGTGGAGGAGAGCCGACCAGAT74669CTTGTAAGTTCAGCATCCACGGTGAGAGGAAGAGCAGTGGCGACGGTAAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:42896343-42896362
GGATATGCGGTGGAGGAGAGCCGACCAAAT42896343CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGATAAG
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31659604-31659623
GGAGATGCGGTGGAGGAGAGCCGACCAGAT31659604CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:36689350-36689369
GGAGATGCGGTGGAGGAGAGCCGACCAGAT36689350CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG
39RDBRT_UP_015_A01_05APR2004_015 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX270847.1:478-497
GCCACCATTCCTCGTCTTACCGTCGCCACC478GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica oleracea var. viridis mRNA, clone: KALE-045P17, 5' end sequence.
DK473119.1:343-362
CTTACCGTCGCCACCGCTCCTCCTCTCACC343GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACTGCATCTCC
Brassica oleracea var. viridis mRNA, clone: KALE-140M02, 3' end sequence.
DK568935.1:22-41
GCCACCGCTCCTCCTCTCACC22GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACTGCATCTCC
BOGUD83TR BOGU Brassica oleracea genomic clone BOGUD83, genomic survey sequence.
BH480997.1:507-526
CTTACCGTCGCCACCGCTCCTCCTCTCACT507GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC
BOHIJ81TF BOHI Brassica oleracea genomic clone BOHIJ81, genomic survey sequence.
BH488190.1:390-409
CTTACCGTCGCCACTGCTCTTCCTCTCACC390GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACAGCATCTCC
odg48h06.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH942318.1:92-111
CTTACCGTCGCCACCGCTCCTCCTCTCACT92GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC
BOMSB33TF BO_2_3_KB Brassica oleracea genomic clone BOMSB33, genomic survey sequence.
BZ515122.1:622-641
CTTACCGTCGCCACCGCTCCTCCTCTCACC622GTGGATGCTGAACTTACAAGATCTTTTCGGCTCTCCTCCACTGCATCTCC
Brassica napus GSS, clone JBnB036I02, end read, primer SACR2(reverse).
CU943881.1:147-166
CTTATCGTCGCCACCGCTCCTCCTCTCACC147GTGGATGCTGAACTTACAAGATTTGGTCGGCTCTCCTCCACCGCATATCC
BOT01-49G12TF BOT01 Brassica oleracea genomic clone BOT01-49G12, genomic survey sequence.
FI709151.1:141-160
CTTACCGTCGCCACCGCTCCTCCTCTCACC141GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
BOT01-97P4TR BOT01 Brassica oleracea genomic clone BOT01-97P4, genomic survey sequence.
FI746253.1:180-199
CTTACCGTCGCCACCGCTCCTCCTCTCACT180GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC
Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:16396552-16396571
GCGGGAGTTAGCTGATAGTTGAAAGTTGGT16396552GTGGATGCTGAACTTACAAGTGTAGAAGCATGAACTGTGCTTGAATTTAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:7836826-7836845
CTTACCGTCGCCACCGCTCCTCCTCTCACC7836826GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTTCTCCACCGCATCTCC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:9698832-9698851
CTTATCGTCGCCACCGCTCCTCCTCTCACC9698832GTGGATGCTGAACTTACAAGATTTGGTCGGCTCTCCTCCACCGCATATCC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:26272631-26272650
CTTACCGCCGCCACCGCTCCTCCTCTCACT26272631GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:10914125-10914144
CTTACCGTCGCCACCACTCCTCCTCTCACC10914125GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:11925703-11925722
CTTACCGTCGCCACCGCTCCTCCTCTCACC11925703GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica rapa genome, scaffold: A01.
LR031571.1:21011577-21011596
CTTACCATCGCCACCGCTCCTCCTCTCACC21011577GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica rapa genome, scaffold: A07.
LR031574.1:19870559-19870578
GCCACCATTCCTCGTCTTACCGTCGCCACC19870559GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:58565754-58565773
CTTACCGTCGCCACCGCTTCTCCTCTCACC58565754GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGAATCTCC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:12307380-12307399
CTTACCGTCGCCACCGCTCCTCCTCTCACC12307380GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:12061652-12061671
CTTACCGTCGCCACCGCTCCTCCTCTCACC12061652GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGAGATCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:20161733-20161752
GCCACCATTCCTCGTCTTACCGTCGCCACC20161733GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cttgtaagttcagcatccac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cttgtaagttcagcatccac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.254 | 0.246 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTAAGTTCAGCATCCAC&k=0&no_gap=0&offset=0&limit=50
0.729 | 0.475 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGATGCTGAACTTACAAG&k=0&no_gap=0&offset=0&limit=34
0.744 | 0.015 | cgi_end;

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