GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:33:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

sp_a10_75 Sweetpotato cDNA library A Ipomoea batatas cDNA 5', mRNA sequence.
EE876059.1:309-332
TCAGCTATTGCATAGTTAGTAGTTACACTG309CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea nil mRNA, clone: JMFS036D07, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY938680.1:471-494
TCGGCTATTGCATAGTTAGTAGTTACACTG471CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea nil mRNA, clone: JMFS037H04, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY938794.1:290-313
TCGGCTATTGCATAGTTAGTAGTTACACTG290CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea nil mRNA, clone: JMFS052C10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY939971.1:290-313
TCGGCTATTGCATAGTTAGTAGTTACACTG290CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea nil mRNA, clone: JMFS082G01, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY942363.1:501-524
TCGGCTATTGCATAGTTAGTAGTTACACTG501CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
TSA: Ipomoea batatas Contig_200.Ipbalsr mRNA sequence.
JP104788.1:2563-2586
TCAGCCATCGCATAGTTAGTAGTTACACTG2563CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea trifida cultivar NCNSP0306 chromosome 1.
CP025644.1:15351383-15351406
TCAGCCATCGCATAGTTAGTAGTTACACTG15351383CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea trifida cultivar NCNSP0306 chromosome 1.
CP025644.1:15354911-15354934
TCAGCCATCGCATAGTTAGTAGTTACACTG15354911CTTGTTGATTGCCAACAAAGGCTAATCATCTTCAAGTTAGGTATACTGCATTTC
Ipomoea triloba cultivar NCNSP0323 chromosome 11.
CP025670.1:14029527-14029550
GAAATGCAGTATACCTAACTTGAAGATGAT14029527TAGCCTTTGTTGGCAATCAACAAGTAGTGTAACTACTAACTATGCGATGGCTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cttgttgattgccaacaaaggcta
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cttgttgattgccaacaaaggcta | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.714 | 0.705 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGTTGATTGCCAACAAAGGCTA&k=0&no_gap=0&offset=0&limit=50
0.789 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCCTTTGTTGGCAATCAACAAG&k=0&no_gap=0&offset=0&limit=42
0.790 | 0.001 | cgi_end;

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