GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 01:57:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHHU93TR BOHH Brassica oleracea genomic clone BOHHU93, genomic survey sequence.
BH585621.1:233-252
ATGACGAAGGATGATGAATGTTATCCGTGG233GAAACGAGCAATTGACCCGAGAGAGAGATATGGGTCGAGTAAAGCTCTCA
BOT01-6D7TF BOT01 Brassica oleracea genomic clone BOT01-6D7, genomic survey sequence.
FI690323.1:709-728
ATGACGAAAGATGATGAATGTTATCCGTGG709GAAACGAGCAATTGACCCGAGAGAGAGATATGGGTCGAGTAAAGCTCTCA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41163263-41163282
TTATGACGAAGGATGATGAATTATCCGTGG41163263GAAACGAGCAATTGACCCGATAGAGAGACATGGGTCGAGTAAAGCTCTCA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50419398-50419417
AGGACGGAGGATGATGAATGTTATCCGTGG50419398GAAACGAGCAATTGACCCGATAGAGAGATATGGGTCGAGTAAAGCTCTCA
BOMSB33TF BO_2_3_KB Brassica oleracea genomic clone BOMSB33, genomic survey sequence.
BZ515122.1:170-189
TGAGAGCTTTACTCGACCCATATCTCTCTC170TCGGGTCAATTGCTCGTTTCCCACGGATAACATTCATCATCCTTCGTCAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:507936-507955
TGAGAGCTTTACTCGACCCATGTCTCTCTA507936TCGGGTCAATTGCTCGTTTCCCACGGATAATTCATCATCCTTCGTCATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gaaacgagcaattgacccga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gaaacgagcaattgacccga | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=GAAACGAGCAATTGACCCGA&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=TCGGGTCAATTGCTCGTTTC&k=0&no_gap=0&offset=0&limit=46
0.158 | 0.001 | cgi_end;

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