GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-16 16:54:05, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020160060384-A/1: A method for identifying pear varieties using microsatellites markers.
LG149947.1:1-20
1GAAAGACTTGCAGTGGGAGC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:27887256-27887275
GGATTTCCGTAGTGGCCTCACAACTGTCCC27887256GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCTCG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:28385354-28385373
GGATTTCCGTAGTGGCCTCACAAGTGTCCC28385354GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCTCG
Malus domestica cultivar Red Fuji chromosome 17.
CP147809.1:27562490-27562509
GGATTTCCGTAGTGGCCTCACAAGTGTCCC27562490GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCTCG
Malus domestica cultivar Red Fuji chromosome 17.
CP147818.1:27502524-27502543
GGATTTCCGTAGTGGCCTCACAAGTGTCCC27502524GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCTCG
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:27708346-27708365
GGATTTCCGTAGTGGCCTCACAACTGTCCC27708346GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCTCG
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:21740816-21740835
GGGTTTCCGTAGTGGCCTCACAAGTGTCCC21740816GAAAGACTTGCAGTGGGAGCAGTTTCTCAAGGAGACCAACAACTGTCACG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:6560456-6560475
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6560456GCTCCCACTGCAAGTCTTTCGGGACAGTTGTGAGGCCACTACGGAAATCC
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:6383411-6383430
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6383411GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus ioensis cultivar PI590015 chromosome 17.
CP154740.1:6126106-6126125
CGGGACAGTTGTTGGTCTCCTTGAGAAACT6126106GCTCCCACTGCAAGTCTTTCGGTACACTTGTGAGGCCACTACGGAAATCC
Malus coronaria cultivar PI590014 chromosome 17.
CP154774.1:6353706-6353725
CGGGACAGTTGTTGGTCTCCTTGAGAAACT6353706GCTCCCACTGCAAGTCTTTCGGTACACTTGTGAGGCCACTACGGAAATCC
Malus domestica cultivar WA 38 chromosome 17B.
CP165700.1:6985716-6985735
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6985716GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica cultivar WA 38 chromosome 17A.
CP165717.1:6117756-6117775
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6117756GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica cultivar Golden Delicious chromosome 17.
CP168781.1:6132034-6132053
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6132034GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica cultivar Golden Delicious chromosome 17.
CP168798.1:6415596-6415615
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6415596GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:6572578-6572597
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6572578GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica genome assembly, chromosome: 17.
OU696693.1:6386534-6386553
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6386534GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica genome assembly, chromosome: 17.
OU744969.1:6383457-6383476
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6383457GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Malus domestica genome assembly, chromosome: 17.
OU745007.1:6805635-6805654
CGAGACAGTTGTTGGTCTCCTTGAGAAACT6805635GCTCCCACTGCAAGTCTTTCGGGACACTTGTGAGGCCACTACGGAAATCC
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:7314292-7314311
CGAGACAGTTGTTGGTCTCCTTGAGAAACT7314292GCTCCCACTGCAAGTCTTTCGGGACACTTGTGACTGTGAGGCCACTACGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gaaagacttgcagtgggagc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gaaagacttgcagtgggagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.267 | 0.258 | search_plus_done; http://172.18.8.135:50800/match?q=GAAAGACTTGCAGTGGGAGC&k=0&no_gap=0&offset=0&limit=50
0.372 | 0.105 | search_minus_done; http://172.18.8.135:50800/match?q=GCTCCCACTGCAAGTCTTTC&k=0&no_gap=0&offset=0&limit=43
0.381 | 0.009 | cgi_end;

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