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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 01:48:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

odi23h12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH923697.1:268-285
ACTGTCGATATCTGCAACCTTGATCCTTGG268GAATTGCCTCGTAAGTCCTGTCTCTATCAGGTTTGGATCTCATCGTCT
JBnY027F18F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY027F18, genomic survey sequence.
DU101874.1:603-620
ACTGTCGATATCTGCAACCTTGATCCTTGG603GAATTGCCTCGTAAGTCCTGTCTCTATCAGGTTTGGATCTCATCGTCT
Brassica rapa subsp. pekinensis clone KBrB085F20, complete sequence.
FP340617.1:62719-62736
ACTGTCAATATCTGCAACCTTGATCCTTGG62719GAATTGCCTCGTAAGTCCTGTCTCTATCATCATCGTCAAGTCCTGTCT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69191144-69191161
ACTGTCAATATCTGCAACCTTGATCCTTGG69191144GAATTGCCTCGTAAGTCCTGTCTCTATCATCATCGTCTAGCTAAGTTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53127103-53127120
ACTGTCAATATCTGCAACCTTGATCCTTGG53127103GAATTGCCTCGTAAGTCCTGTCTCTATCATCATCGTCTAGCTAAGTTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41282197-41282214
ACTGTCGATATCTGCAACCTTGATCCTTGG41282197GAATTGCCTCGTAAGTCCTGTCTCTATCAGGTTTGGATCTCATCGTCT
Brassica rapa genome, scaffold: A09.
LR031568.1:57297045-57297062
ACTGTCAATATCTGCAACCTTGATCCTTGG57297045GAATTGCCTCGTAAGTCCTGTCTCTATCATCATCGTCTAGCTAAGTTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50540019-50540036
ACTGTCGATATCTGCAACCTTGATCCTTGG50540019GAATTGCCTCGTAAGTCCTGTCTCTATCAGGTTTGGATCTCATCGTCT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67821138-67821155
ACTGTCAATATCTGCAACCTTGATCCTTGG67821138GAATTGCCTCGTAAGTCCTGTCTCTATCATCATCGTCTAGCTAAGTTG
Dicrocoelium dendriticum genome assembly, scaffold: DDEL_scaffold0129396.
LK530572.1:283-300
TTGTGTTGACAACTGTACGGGAGAAAGTAA283GAATTGCCTCGTAAGTCCACTATTTTACCGATTAATCGATTATTAACG
Ischnura elegans genome assembly, chromosome: 3.
OV121102.1:17040351-17040368
GATTTTCCTCGGGATGGTGCATTGGTTTCG17040351GAATTGCCTCGTAAGTCCCTGGAAATGGGAGCGATGACGTTGCGATGA
Chloroclysta siterata genome assembly, chromosome: 2.
OW028589.1:6515589-6515606
ATGTTAAGTGGTATCATCACCTACAACAAT6515589GAATTGCCTCGTAAGTCCCGCACGGTAGGAACGTACCCTACGATGCAC
Chloroclysta siterata genome assembly, chromosome: 16.
OW028604.1:5292083-5292100
AGTTAAGTGGTAACCATCACCTATAACAAA5292083GAATTGCCTCGTAAGTCCCGCACGACAAGAACGTGCCCTACGATGCAC
Dicrocoelium dendriticum genome assembly, chromosome: 2.
OX104064.1:92030279-92030296
TTGTGTTGACAACTGTACGGGAGAAAGTAA92030279GAATTGCCTCGTAAGTCCACTATTTTAGCGATTAATCGATTATTAACG
Electrophaes corylata genome assembly, chromosome: 10.
OX352708.1:3134925-3134942
TGTTAAGTGGTTACCATTACCTATAAGAAA3134925GAATTGCCTCGTAAGTCCTGTTCGTTAGGTACATTACTTACGATGCAC
Cheilosia grossa genome assembly, chromosome: 2.
OY720145.1:56218098-56218115
TCTTGTGAACGTATCACATAAGAATGGCCA56218098GAATTGCCTCGTAAGTCCACATGATTGTGTCGATGGTACAAACATGAT
BOT01-104H17TR BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI755426.1:750-767
AGACGATGAGATCCAAACCTGATAGAGACA750GGACTTACGAGGCAATTCCCAAGGATCAAGGTTGCAGATATCGACAGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:102012-102029
AGACAGGACTTGACGATGATGATAGAGACA102012GGACTTACGAGGCAATTCCCAAGGATCAAGGTTGCAGATATTGACAGT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:389194-389211
AGACGATGAGATCCAAACCTGATAGAGACA389194GGACTTACGAGGCAATTCCCAAGGATCAAGGTTGCAGATATCGACAGT
Dicrocoelium dendriticum genome assembly, chromosome: 2.
OX104064.1:92012150-92012167
CGTTAATAATCGATTAATCGCTAAAATAGT92012150GGACTTACGAGGCAATTCTTACTTTCTTCCGTACAGTTGTCAACACAA
Acleris cristana genome assembly, chromosome: 22.
OX411794.1:2560500-2560517
TATAGAATCCTTTAACCATTTTACATCCTG2560500GGACTTACGAGGCAATTCAGTGGAATCTTTGTACAAAAATCCAGTCAC
Hoplodrina blanda genome assembly, chromosome: 3.
OX438581.1:3928996-3929013
CGAGCCGCAACACGCTGGCAGCTAATGGTT3928996GGACTTACGAGGCAATTCCGGCCGTGTCGAAGCGGTGCTGTCAAAATG
Plemyria rubiginata genome assembly, chromosome: 18.
OY754923.1:4592870-4592887
ATATTAATAATTATTAAATATTTTCATGCG4592870GGACTTACGAGGCAATTCTTTGTTATAGGTGATGGTTACCACATAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gaattgcctcgtaagtcc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gaattgcctcgtaagtcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.406 | 0.397 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTGCCTCGTAAGTCC&k=0&no_gap=0&offset=0&limit=50
0.549 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTTACGAGGCAATTC&k=0&no_gap=0&offset=0&limit=34
0.554 | 0.005 | cgi_end;

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