GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:56:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:16157887-16157909
TGATGAATATATTGTGGACCACAAAAGATA16157887GACAGAGTAAGCTAGGGCTAGGGAGAGATGATGATAATGATCGAAACTAAGCT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:17841191-17841213
TGATGAATATATTGTGGACCACAAAAGATA17841191GACAGAGTAAGCTAGGGCTAGGGAGAGATGATGATAATGATCGAAACTAAGCT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:15878448-15878470
TGATGAATATATTGTGGACCACAAAAGATA15878448GACAGAGTAAGCTAGGGCTAGGGAGAGATGATGATAATGATCGAAACTAAGCT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:17927067-17927089
TGATGAATATATTGTGGACCACAAAAGATA17927067GACAGAGTAAGCTAGGGCTAGGGAGAGATGATGATAATGATCGAAACTAAGCT
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:17422476-17422498
TGATGAATATATTGTGGACCACAAAAGATA17422476GACAGAGTAAGCTAGGGCTAGGGAGAGATGATGATAATGATCGAAACTAAGCT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:14644957-14644979
AGCTTAGTTTCGATCATTATCATCATCTCT14644957CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATACATTCATCA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:13289750-13289772
AGCTTAGTTTCGATCATTATCATCATCTCT13289750CCCTAGCCCTAGCTTACTCTGTCTATCCTTTGTGGTCCACAATATATTCATCA
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:13141856-13141878
AGCTTAGTTTCGATCATTATCATCATCTCT13141856CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATATATTCATCA
Malus domestica genome assembly, chromosome: 14.
OU696690.1:14358865-14358887
AGCTTAGTTTCGATCATTATCATCATCTCT14358865CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATATATTCATCA
Malus domestica genome assembly, chromosome: 14.
OU744555.1:14544000-14544022
AGCTTAGTTTCGATCATTATCATCATCTCT14544000CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATATATTCATCA
Malus domestica genome assembly, chromosome: 14.
OU744966.1:14653574-14653596
AGCTTAGTTTCGATCATTATCATCATCTCT14653574CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATACATTCATCA
Malus domestica genome assembly, chromosome: 14.
OU745004.1:14742163-14742185
AGCTTAGTTTCGATCATTATCATCATCTCT14742163CCCTAGCCCTAGCTTACTCTGTCTATCTTTTGTGGTCCACAATATATTCATCA
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:13142625-13142647
AGCTTAGTTTCGATCATTATCATCATCTCT13142625CCCTAGCCCTAGCTTACTCTGTCTGTCTTTTGTGGTCCACAATATATTCATCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gacagagtaagctagggctaggg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gacagagtaagctagggctaggg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.170 | 0.161 | search_plus_done; http://172.18.8.135:50400/match?q=GACAGAGTAAGCTAGGGCTAGGG&k=0&no_gap=0&offset=0&limit=50
0.273 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=CCCTAGCCCTAGCTTACTCTGTC&k=0&no_gap=0&offset=0&limit=45
0.279 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).