GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:33:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS21029A16 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101827.1:195-218
GCCTCTCCTCTTTCCACGAGGGCTGAAGTA195GAGGGGGTAGATAACAGTAGCAAGCCTGAAAGTGGAAGTGCTAAATTAGCCAAT
KS25003A16 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124080.1:66-89
GCCTCTCCTCTTTCCACGAGGGCTGAAGTA66GAGGGGGTAGATAACAGTAGCAAGCCTGAAAGTGGAAGTGCTAAATTAGCCAAT
TSA: Capsicum annuum MGMT_Contig15034, mRNA sequence.
JW065278.1:2487-2510
GCCTCTCCTCTTTCCACGAGGGCTGAAGTA2487GAGGGGGTAGATAACAGTAGCAAGCCTGAAAGTGGAAGTGCTAAATTAGCCAAT
TSA: Capsicum annuum MGMT_Contig44113 mRNA sequence.
JW094357.1:1844-1867
GCCTCTCCTCTTTCCACGAGGGCTGAAGTA1844GAGGGGGTAGATAACAGTAGCAAGCCTGAAAGTGGAAGTGCTAAATTAGCCAAT
TSA: Capsicum annuum CM_MegaContig_27655 mRNA sequence.
JW104768.1:1914-1937
GCCTCTCCTCTTTCCACGAGGGCTGAAGTA1914GAGGGGGTAGATAACAGTAGCAAGCCTGAAAGTGGAAGTGCTAAATTAGCCAAT
KS23009B12 KS23 Capsicum annuum cDNA, mRNA sequence.
GD111788.1:588-611
ATTGGCTAATTTAGCACTTCCACTTTCAGG588CTTGCTACTGTTATCTACCCCCTCTACTTCAGCCCTCGTGG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:131244348-131244371
ATCGGCTAATTTAGCACTTCCACCTTCAGG131244348CTTGCTACTGTTATCTACCCCCTCTACTTCAGCCCTCGTGGAGAGAGGAGAGGC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:157007416-157007439
ATTGGCTAATTTAGCACTTCCACTTTCAGG157007416CTTGCTACTGTTATCTACCCCCTCTACTTCAGCCCTCGTGGAAAGAGGAGAGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gagggggtagataacagtagcaag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gagggggtagataacagtagcaag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.324 | 0.315 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGGGGTAGATAACAGTAGCAAG&k=0&no_gap=0&offset=0&limit=50
0.427 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGCTACTGTTATCTACCCCCTC&k=0&no_gap=0&offset=0&limit=45
0.430 | 0.002 | cgi_end;

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