GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:39:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS07018A04 KS07 Capsicum annuum cDNA, mRNA sequence.
BM066760.1:189-212
CACGCCCTGCGACGGCGCGTGAGTTAATGA189GAGTATGTAAGGAGCTAAAGGGGAGATTTGAAGAGGTCACGGTCCCATTTCTGA
KS13032G09 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054612.1:483-506
TCAGAAATGGCACCGTGACCTCTTCAAATC483TCCCCTTTAGCTCCTTACATACTCTCATTAACTCACGCGCCGTCGCAGGGCGTG
KS25004F19 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124197.1:460-483
TCAGAAATGGCACCGTGACCTCTTCAAATC460TCCCCTTTAGCTCCTTACATACTCTCATTAACTCACGCGCCGTCGCAGGGCGTG
TSA: Capsicum annuum MGMT_Contig33054 mRNA sequence.
JW083298.1:597-620
TCAGAAATGGCACCGTGACCTCTTCAAATC597TCCCCTTTAGCTCCTTACATACTCTCATTAACTCACGCGCCGTCGCAGGGCGTG
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:248399707-248399730
TCAGAAATGGCACCGTGACCTCTTCAAATC248399707TCCCCTTTAGCTCCTTACATACTCTCATTAACTCACGCGCCGTCGCAGGGCGTG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:249586294-249586317
TCAGAAATGGCACCGTGACCTCTTCAAATC249586294TCCCCTTTAGCTCCTTACATACTCTCATTAACTCACGCGCCGTCGCAGGGCGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gagtatgtaaggagctaaagggga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gagtatgtaaggagctaaagggga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTATGTAAGGAGCTAAAGGGGA&k=0&no_gap=0&offset=0&limit=50
0.382 | 0.258 | search_minus_done; http://172.18.8.135:50400/match?q=TCCCCTTTAGCTCCTTACATACTC&k=0&no_gap=0&offset=0&limit=49
0.386 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).