GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

030128ABPB002677HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB002677, mRNA sequence.
CN917410.1:38-57

CCAATTGCAAAGAAGGTAACCACTGAAGAT38GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGCATAACTGACGG

TSA: Pyrus pyrifolia mRNA, contig: contig_6818unknown.
FX408257.1:325-344

CCAATTGGAAAGAAGGTAATCACTGAAGAT325GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTANNNNTTTGTTTGGGT

Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:9003437-9003456

CCAATTGGAAAGAAGGTAATCACTGAAGAT9003437GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:8752841-8752860

CCAATTGGAAAGAAGGTAATCACTGAAGAT8752841GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:8645566-8645585

CCAATTGCAAAGAAGGTAACCACTGAAGAT8645566GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:7736651-7736670

CCAATTGGAAAGAAGGTAATCACTGAAGAT7736651GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:7705635-7705654

CCAATTGCAAAGAAGGTAACCACTGAAGAT7705635GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:8434297-8434316

CCAATTGGAAAGAAGGTAATCACTGAAGAT8434297GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:8098447-8098466

CCAATTGCAAAGAAGGTAACCACTGAAGAT8098447GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus domestica genome assembly, chromosome: 12.
OU696688.1:8713808-8713827

CCAATTGGAAAGAAGGTAATCACTGAAGAT8713808GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus domestica genome assembly, chromosome: 14.
OU696690.1:8377475-8377494

CCAATTGCAAAGAAGGTAACCACTGAAGAT8377475GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus domestica genome assembly, chromosome: 12.
OU744553.1:8792177-8792196

CCAATTGGAAAGAAGGTAATCACTGAAGAT8792177GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus domestica genome assembly, chromosome: 14.
OU744555.1:8649944-8649963

CCAATTGCAAAGAAGGTAACCACTGAAGAT8649944GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus domestica genome assembly, chromosome: 12.
OU744964.1:8531565-8531584

CCAATTGGAAAGAAGGTAATCACTGAAGAT8531565GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus domestica genome assembly, chromosome: 14.
OU744966.1:8927918-8927937

CCAATTGCAAAGAAGGTAACCACTGAAGAT8927918GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Malus domestica genome assembly, chromosome: 12.
OU745002.1:8764820-8764839

CCAATTGGAAAGAAGGTAATCACTGAAGAT8764820GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT

Malus domestica genome assembly, chromosome: 14.
OU745004.1:8557159-8557178

CCAATTGCAAAGAAGGTAACCACTGAAGAT8557159GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT

Pyrus communis genome assembly, chromosome: 13.
OY757080.1:6190461-6190480

CCAATTGCAAAGAAGGTAACCACTGAAGAT6190461GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTATTCTCATAT

Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:982607552-982607571

AATATAACATCTAGCTTTATATTGTTGTCT982607552GATGTGGTTCCAGAAGCTACCAAACAATACCACCCTTTCCCTTCTTACTA

Dolomedes plantarius genome assembly, chromosome: X1.
OU015494.1:126493058-126493077

GTTTTAATTTGAAAAGACTTTGCTACCGCA126493058GATGTGGTTCCAGAAGCTACAGGAATATTGTATCAACCGCACTGGACAAA

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:22351089-22351108

ATATGAGAGTACCTATACAGTATAGCAGGA22351089GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:23338447-23338466

ATATGAGAATACCTGTACAGTATAGCAGGA23338447GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:23336686-23336705

ATATGAGAGTACCTATACAGTATAGCAGGA23336686GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:22153506-22153525

ATATGAGAGTACCTATACAGTATAGCAGGA22153506GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:23410984-23411003

ATATGAGAGTACCTATACAGTATAGCAGGA23410984GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Malus x robusta genome assembly, chromosome: 13.
OY720337.1:23087935-23087954

ATATGAGAATACCTGTACAGTATAGCAGGA23087935GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG

Malus x robusta genome assembly, chromosome: 15.
OY720339.1:22761877-22761896

ATATGAGAGTACCTATACAGTATAGCAGGA22761877GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:24533875-24533894

ATATGAGAATACCTGTACAGTATAGCAGGA24533875GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG

Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:23987456-23987475

ATATGAGAATACCTATACAGTATAGCAGGA23987456GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG

Pyrus communis genome assembly, chromosome: 9.
OY757076.1:20569614-20569633

ATATGAGAATACCTGTACAGTATAGCAGGA20569614GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG

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Debug Info:

0.008 | 0.008 | search_start;
0.169 | 0.160 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTGGTTCCAGAAGCTAC&k=0&no_gap=0&offset=0&limit=50
0.227 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCTTCTGGAACCACATC&k=0&no_gap=0&offset=0&limit=30
0.234 | 0.007 | cgi_end;

Summary:

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