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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:01:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sphenella marginata genome assembly, chromosome: 4.
OX608081.1:29854285-29854304
GGGTGTGCTAGCAAATAGAAATCTGGTTTA29854285GCAAAAACCACAGGCATAACAATTTAATGACTATTTGTGTCTTTTAATTA
Uncultured bacterium clone B2PC_40_N10_0 genomic sequence, sequence.
MH106271.1:17998-18017
CTCAAGGAGTTGGTGCATGCTGCAACTGGT17998GTTATGCCTGTGGTTTTTGCAGCTTCCACTTGAAAAATGAGATTCTGTTA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:24152858-24152877
GAAAATGATGAACAAAAGGGCTCTGACTTT24152858GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:25014021-25014040
GAAAATGATGAACAAAAGGGCTCTGACTTT25014021GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:23186788-23186807
GAAAATGATGAACAAAAGGGCTCTGACTTT23186788GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:23731298-23731317
GAAAATGATGAACAAAAGGGCTCTGACTTT23731298GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:24854789-24854808
GAAAATGATGAACAAAAGGGCTCTGACTTT24854789GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:23081010-23081029
GAAAATGATGAACAAAAGGGCTCTGACTTT23081010GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:24753941-24753960
GAAAATGATGAACAAAAGGGCTCTGACTTT24753941GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:24431983-24432002
GAAAATGATGAACAAAAGGGCTCTGACTTT24431983GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:24813536-24813555
GAAAATGATGAACAAAAGGGCTCTGACTTT24813536GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:25550138-25550157
GAAAATGATGAACAAAAGGGCTCTGACTTT25550138GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:24465892-24465911
GAAAATGATGAACAAAAGGGCTCTGACTTT24465892GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:23254792-23254811
GAAAATGATGAACAAAAGGGCTCTGACTTT23254792GTTATGCCTGTGGTTTTTGCGAGCCAATTTAGCATAAAAACAGTAAAAAT
Brenthis daphne genome assembly, chromosome: 5.
OX352475.1:30278855-30278874
GAAATATTCACTTGTGTAACAATATTACGC30278855GTTATGCCTGTGGTTTTTGCTTTAACTTGTAGACATATTAGTATATTATA
Nycteola revayana genome assembly, chromosome: 25.
OY855748.1:10930828-10930847
AGTTTTTTTTTCGGACCGACATAATATATT10930828GTTATGCCTGTGGTTTTTGCTACTTCACCGGGCATAACTTAAGTTAGTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gcaaaaaccacaggcataac
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gcaaaaaccacaggcataac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.176 | 0.167 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAAAACCACAGGCATAAC&k=0&no_gap=0&offset=0&limit=50
0.286 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=GTTATGCCTGTGGTTTTTGC&k=0&no_gap=0&offset=0&limit=49
0.296 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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