GGGenome | Results

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2025-04-09 01:54:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Lactuca sativa Letassy_X1_1191 mRNA sequence.
JI577574.1:922-945

ACCATCTCTTCGTACCTCTCGGCTTGCTCC922GCAAGCTTCGCCATGTACACATACTGCTCTCTCGTTAAATTTTCCGGCATGGTG

TSA: Lactuca serriola Serrassy_T_P2_41091 mRNA sequence.
JO024361.1:922-945

ACCATCTCTTCGTACCTCTCGGCTTGCTCC922GCAAGCTTCGCCATGTACACATACTGCTCTCTCGTTAAATTTTCCGGCATGGTG

BH_PBa029I11.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS402999.1:805-828

ACCATCTCTTCGTAACGCTCCGCCTGCTCG805GCAAGCTTCGCCATGTACACATACTGGTCTCTGCCTAATGTCCCCGCCATTAAA

Lactuca saligna genome assembly, chromosome: 9.
OX465085.1:86398257-86398280

ACCATCTCTTCGTACCTCTCGGCTTGCTCC86398257GCAAGCTTCGCCATGTACACATACTGCTCTCTCGTTAAATTTTCCGGCATGGTG

Sequence 12872 from patent US 8030546.
GY465097.1:35-58

CACCATGCCGGAGAATTTAACGAGAGAGCA35GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

Sequence 12872 from patent US 10597667.
MO976250.1:35-58

CACCATGCCGGAGAATTTAACGAGAGAGCA35GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

Ipomoea nil cDNA clone:jm16l10, 5' end, single read.
BJ555279.1:90-113

CTCTGTGACAATGGCGTCGACACGCGAGGA90GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGAGGAGATGGT

Ipomoea nil cDNA clone:jm37j04, 5' end, single read.
BJ562656.1:128-151

CTCTGTGACAATGGCGTCGACACGCGAGGA128GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGAGGAGATGGT

Ipomoea nil cDNA clone:jm38m05, 5' end, single read.
BJ563022.1:128-151

CTCTGTGACAATGGCGTCNACACGCGAGGA128GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGANGAGATGGT

Arabidopsis thaliana cDNA clone:RAFL22-77-C18, 5' end.
BP827928.1:66-89

CTCTAATGGCGGCGACATTAGGCAGAGACA66GTATGTGTACATGGCGAAGCTTGCCGAGCAGGCGGAGCGTTACGAAGAGATGGT

QGJ14I07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ14I07, mRNA sequence.
BU010806.1:7-30

AGAGCA7GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

QGJ5C14.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ5C14, mRNA sequence.
BU013625.1:7-30

AGAGCA7GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLLY13041.b1_B22.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY13041, mRNA sequence.
DW060527.1:18-41

TTCGCGGGGAGAGAGGA18GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLLY13870.b1_K11.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY13870, mRNA sequence.
DW061422.1:1-24

1GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLPX4117.b1_I22.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPX4117, mRNA sequence.
DW081220.1:77-100

CACCATGCCGGAAAATCTAACTAGAGAGCA77GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAGAGGTACGAAGAGATGGT

CLPX6464.b1_P08.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPX6464, mRNA sequence.
DW083735.1:76-99

CACCATGCCGGAAAATCTAACTAGAGAGCA76GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAGAGGTACGAAGAGATGGT

CLPY2102.b1_L21.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY2102, mRNA sequence.
DW090838.1:88-111

CACCATGCCGGAAAATCTAACTAGAGAGCA88GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAGAGGTACGAAGAGATGGT

CLPY8389.b1_J10.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY8389, mRNA sequence.
DW097366.1:83-106

CACCATGCCGCACTTACTAACTAGAGAGCA83GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAGAGGTACGAAGAGATGGT

CLRX7052.b1_H11.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX7052, mRNA sequence.
DW110017.1:46-69

CACCATGCCGGAAAATTTAACGAGAGAGCA46GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLSX5797.b1_I09.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX5797, mRNA sequence.
DW128995.1:35-58

CACCATGCCGGAGAATTTAACGAGAGAGCA35GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLVY14513.b1_B06.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY14513, mRNA sequence.
DW162571.1:52-75

CACCATGCCGGAAAATTTAACGAGAGAGCA52GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLVY6789.b1_I18.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY6789, mRNA sequence.
DW168435.1:447-470

CACCATGCCGGAAAATTTAACGAGAGAGCA447GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLSS2830.b1_L11.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS2830, mRNA sequence.
DY980843.1:72-95

CACCATGCCGGAAAATTTAACGAGAGAGCA72GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CLSS4477.b2_I16.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS4477, mRNA sequence.
DY982487.1:64-87

CACCATGCCGGAAAATTTAACGAGAGAGCA64GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAGAGGTACGAAGAGATGGT

CCPW15525.b1_J17.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW15525, mRNA sequence.
GE591570.1:71-94

CACCGTGCCGGAGAATCTCACAAGAGAGCA71GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

CCPW15717.b1_J18.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW15717, mRNA sequence.
GE591775.1:67-90

CACCGTGCCGGAGAATCTCACAAGAGAGCA67GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

CCPW9376.b1_P15.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW9376, mRNA sequence.
GE601071.1:90-113

CACCGTGCCGGAGAATCTCACAAGAGAGCA90GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

CCPX10458.b1_C23.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPX10458, mRNA sequence.
GE602237.1:80-103

CACCGTGCCGGAGAATCTCACAAGAGAGCA80GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

CCPX12082.b1_D21.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPX12082, mRNA sequence.
GE603977.1:79-102

CACCGTGCCGGAGAATCTCACAAGAGAGCA79GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

CCPX3259.b1_F23.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPX3259, mRNA sequence.
GE606174.1:90-113

CACCGTGCCGGAGAATCTCACAAGAGAGCA90GTATGTGTACATGGCGAAGCTTGCGGAACAAGCCGAACGCTACGAAGAGATGGT

Ipomoea nil mRNA, clone: jm42j24, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923552.1:112-135

CTCTGTGACAATGGCGTCGACACGCGAGGA112GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGAGGAGATGGT

Ipomoea nil mRNA, clone: jm43o15, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY924032.1:128-151

CTCTGTGACAATGGCGTCGACACGCGAGGA128GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGAGGAGATGGT

Ipomoea nil mRNA, clone: jm46f09, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY924932.1:65-88

CTCTGTGACAATGGCGTCGACACGCGAGGA65GTATGTGTACATGGCGAAGCTTGCGGAGCAGGCGGAACGCTACGAGGAGATGGT

TSA: Saussurea involucrata Unigene54073_SAUriwTARAAPEI-1, mRNA sequence.
JW881842.1:85-108

CCCCGTGCCGGACAATCTAACAAGAGAGCA85GTATGTGTACATGGCGAAGCTTGCGGAGCAAGCCGAACGCTACGAAGAGATGGT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.165 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGCTTCGCCATGTACACATAC&k=0&no_gap=0&offset=0&limit=50
1.732 | 1.567 | search_minus_done; http://172.18.8.135:50400/match?q=GTATGTGTACATGGCGAAGCTTGC&k=0&no_gap=0&offset=0&limit=46
1.752 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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