GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:11:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH02019B11 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO776824.1:411-435
GTTTTTGATGGTCATGGTGGTTCAAGAACA411GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
Solanum melongena mRNA, clone: SmFL09K20, 5'end.
FS072598.1:472-496
GTTTTTGATGGTCATGGTGGTTCAAGAACA472GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGCAGTCATCCTGATTTTA
Solanum melongena mRNA, clone: SmFL15H11, 5'end.
FS076675.1:476-500
GTTTTTGATGGTCATGGTGGTTCAAGAACA476GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGCAGTCATCCTGATTTTA
Solanum melongena mRNA, clone: SmFL15P13, 5'end.
FS077030.1:476-500
GTTTTTGATGGTCATGGTGGTTCAAGAACA476GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGCAGTCATCCTGATTTTA
KS20056H04 KS20 Capsicum annuum cDNA, mRNA sequence.
GD098517.1:54-78
GTTTTTGATGGTCATGGTGGTTCAAGAACA54GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
KS25010E05 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124736.1:188-212
GTTTTTGATGGTCATGGTGGTTCAAGAACA188GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
KS25013P16 KS25 Capsicum annuum cDNA, mRNA sequence.
GD125067.1:416-440
GTTTTTGATGGTCATGGTGGTTCAAGAACA416GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
KS25035H15 KS25 Capsicum annuum cDNA, mRNA sequence.
GD126978.1:391-415
GTTTTTGATGGTCATGGTGGTTCAAGAACA391GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
KS25052F01 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128515.1:188-212
GTTTTTGATGGTCATGGTGGTTCAAGAACA188GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
TSA: Capsicum annuum MA_MegaContig_32955, mRNA sequence.
JW160587.1:562-586
GTTTTTGATGGTCATGGTGGTTCAAGAACA562GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:185276716-185276740
TTGGCATTAGGTCATGGTGGTTCAAGAACA185276716GCAGAATACCTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTA
TSA: Capsicum annuum MGMT_Contig19538, mRNA sequence.
JW069782.1:1446-1470
TAAAATCAGGATGACTACTCAAATTCTTAA1446AGAGGTTGTTCTTTAGGTATTCTGCTGTTCTTGAACCACCATGACCATCAAAAAC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:3679681-3679705
TAAAATCAGGATGACTACTCAAATTCTTAA3679681AGAGGTTGTTCTTTAGGTATTCTGCTGTTCTTGAACCACCATGACCTAATACCAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:67729046-67729070
TAAAATCAGGATGACTACTCAAATTCTTAA67729046AGAGGTTGTTCTTTAGGTATTCTGCTGTTCTTGAACCACCATGACCTAATGCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gcagaatacctaaagaacaacctct
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gcagaatacctaaagaacaacctct | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.173 | 1.164 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGAATACCTAAAGAACAACCTCT&k=0&no_gap=0&offset=0&limit=50
1.322 | 0.149 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGGTTGTTCTTTAGGTATTCTGC&k=0&no_gap=0&offset=0&limit=39
1.324 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).