GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:37:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 879 from Patent WO2008034648.
FB781606.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 25102 from Patent WO2008034648.
FB805829.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 34514 from Patent WO2008034648.
FB815241.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 42075 from Patent WO2008034648.
FB822802.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 44651 from Patent WO2008034648.
FB825378.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 59659 from Patent WO2008034648.
FB840386.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 74196 from Patent WO2008034648.
FB854923.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 81170 from Patent WO2008034648.
FB861897.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 89145 from Patent WO2008034648.
FB869872.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 92792 from Patent WO2008034648.
FB873519.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 95739 from Patent WO2008034648.
FB876466.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 101548 from Patent WO2008034648.
FB882275.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 113643 from Patent WO2008034648.
FB894370.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 879 from Patent EP2090662.
HB651665.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 25102 from Patent EP2090662.
HB675888.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 34514 from Patent EP2090662.
HB685300.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 42075 from Patent EP2090662.
HB692861.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 44651 from Patent EP2090662.
HB695437.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 59659 from Patent EP2090662.
HB710445.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 74196 from Patent EP2090662.
HB724982.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 81170 from Patent EP2090662.
HB731956.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 89145 from Patent EP2090662.
HB739931.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 92792 from Patent EP2090662.
HB743578.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 95739 from Patent EP2090662.
HB746525.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 101548 from Patent EP2090662.
HB752334.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 113643 from Patent EP2090662.
HB764429.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Sequence 173586 from Patent EP2090662.
HB824372.1:234-257
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT234GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
KS01041B01 KS01 Capsicum annuum cDNA, mRNA sequence.
BM062308.1:187-210
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT187GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
BJ02003D03 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO906493.1:287-310
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT287GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
BJ02031F09 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908509.1:289-312
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT289GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
KS17013G12 KS17 Capsicum annuum cDNA, mRNA sequence.
GD076736.1:119-142
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT119GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
KS26050A03 KS26 Capsicum annuum cDNA, mRNA sequence.
GD134209.1:297-320
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT297GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
TSA: Capsicum annuum MGMT_Contig39121 mRNA sequence.
JW089365.1:595-618
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT595GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Capsicum annuum mRNA for chloroplast protease (CACP)from the AAA atpase family.
AJ012165.1:259-282
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT259GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:245406917-245406940
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT245406917GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:248494611-248494634
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT248494611GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT
C.annuum mRNA for PFTF (plastid fusion and/or translation factor.
X80755.1:240-263
TGGAAATGTTGGGCTTGGAGCGCCTGCTTT240GTTAGGTAATGGAAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gcataggcttttccattacctaac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gcataggcttttccattacctaac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=GCATAGGCTTTTCCATTACCTAAC&k=0&no_gap=0&offset=0&limit=50
0.878 | 0.787 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAGGTAATGGAAAAGCCTATGC&k=0&no_gap=0&offset=0&limit=50
0.902 | 0.024 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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