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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:16829686-16829703
CAAATATTGATTGGTTTTGTGTTAAATGTT16829686GCATCATCTGATTCGAGCTACCCTATAGCCTTAGATAAGCAAAAGTTT
Rhodothermales bacterium isolate 1504ddc0-b432-43e2-af37-a45191a88aeb genome assembly, chromosome: 1.
OY760427.1:236837-236854
GGATATGCGGCTCACCGCATGGGAAACCGT236837GCATCATCTGATTCGAGCACTTGACACGGGAGGCGAAATGGAAGCCGC
Rhodothermales bacterium isolate 1504ddc0-b432-43e2-af37-a45191a88aeb genome assembly, chromosome: 1.
OY760427.1:447176-447193
GGATATGCGGCTCACCGCATGGGAAACCGT447176GCATCATCTGATTCGAGCACTTGACACGGGAGGCGAAATGGAAGCCGC
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:10333470-10333487
ATACCAACTATGGGAATCACAGAGAGTTGA10333470GCATCATCTGATTCGAGCAACAACTTGACAATCTCGTCTTTATCTTCG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:120460-120477
ACAACTTTCACAGCATGAATTCTGATGTTT120460GCATCATCTGATTCGAGCAATTGCAAGATCTTTTGTAGACCCACTGTT
Quercus variabilis isolate HB chromosome 4b.
CP129436.1:7290326-7290343
ATACCAACTATGGGAATCACAGAGATTTGA7290326GCATCATCTGATTCGAGCAACAACTTGACAATAGCATTTTTATCTTCG
Exiguobacterium sp. AT1b, complete genome.
CP001615.1:2560880-2560897
AGTTTAATTAAAAATTCTTCTTCAAAGATT2560880GCATCATCTGATTCGAGCAACGAAGCAATGTCTTTTACACCTAATTCA
Litomosoides sigmodontis genome assembly, chromosome: 3.
OY718805.1:3298721-3298738
CGGCGATCACGTCACTCGCCGCGTGCATCT3298721GCATCATCTGATTCGAGCCGTGATTCAGCAAGTCCAAGGTATATGGTC
Ovis canadensis canadensis isolate 43U chromosome 25 sequence.
CP011910.1:28461492-28461509
AAACTTTTGCTTATCTAAGGCTATAGGGTA28461492GCTCGAATCAGATGATGCAACATTTAACACAAAACCATCAATATTTGA
BOT01-65H5TF BOT01 Brassica oleracea genomic clone BOT01-65H5, genomic survey sequence.
FI719897.1:913-930
AACAGTGGGTCTACAAAAGATCTTGCAATT913GCTCGAATCAGATGATGCAAACATCAGAATTCATGCTGTGAAA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41556497-41556514
AACAGTGGGTCTACAAAAGATCTTGCAATT41556497GCTCGAATCAGATGATGCAAACATCAGAATTCATGCTGTGAAAGTTGT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50794259-50794276
AACAGTGGGTCTACAAAAGATCTTGCAATT50794259GCTCGAATCAGATGATGCAAACATCAGAATTCATGCTGTGAAAGTTGT
Quercus cerris genome assembly, chromosome: 2.
OY770007.1:84203541-84203558
CGAAGATAAAAATGCTATTGTCAAGTTGTT84203541GCTCGAATCAGATGATGCTCAACTCTCTGTGATTCCCATAGTTGGTAT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:118144309-118144326
ATATGGATCTTTACGGTTTTTTTTATTCTT118144309GCTCGAATCAGATGATGCCAAATTATCATGTCTAGCTCCTTCGGTGCT
Candidatus Nitrososphaera gargensis Ga9.2, complete genome.
CP002408.1:85864-85881
GCCGGAGAATTTCGATCTAATATTTACCGC85864GCTCGAATCAGATGATGCCAAGATAGTCGAGCCGAAATTTGCCAAGAC
Exiguobacterium sp. PFWT01 chromosome, complete genome.
CP073755.1:2028355-2028372
TGAATTAGGTGTGAGAGACATCGCTTCGTT2028355GCTCGAATCAGATGATGCAATCTTTGAAGAAGAATTTTTAATTAAACT
Sphingopyxis chilensis strain S37 chromosome, complete genome.
CP142394.1:2884573-2884590
GAGAAGATGGTGGGGATCATGGCGGCTCTC2884573GCTCGAATCAGATGATGCTGTCGAAATAACATTACTGACACAGATGTC
Anopheles arabiensis genome assembly, chromosome: 1.
OZ001347.1:28326108-28326125
GCGTGCAAGCGAATGGCAGCATCTGAAGGG28326108GCTCGAATCAGATGATGCACTTCACTGTCTGGGTGCATTCTTAGATGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gcatcatctgattcgagc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gcatcatctgattcgagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=GCATCATCTGATTCGAGC&k=0&no_gap=0&offset=0&limit=50
0.312 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCGAATCAGATGATGC&k=0&no_gap=0&offset=0&limit=42
0.319 | 0.007 | cgi_end;

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