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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:13747585-13747604
GAATTAGGTGAAAGGAGGTGGTTTGACAAT13747585GCCATCTGAACAGAATGTGCATCTTTTTCTTGGCAACTAAGAGGAATAGT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:13731686-13731705
GAATTAGGTGAAAGGAGGTGGTTTGACAAT13731686GCCATCTGAACAGAATGTGCATCTTTTTCTTGGCAAATAAGAGGAATAGT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:13851590-13851609
AATTAGGTGAAAGGGGGGTGGCTAGACAAT13851590GCCATCTGAACAGAATGTGCATCTTTTTCTTGGCAAATAAGAGGAATAGT
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:10258564-10258583
AAGGAGGTGGTTTTAAGGTGGCTAGACAAT10258564GCCATCTGAACAGAATGTGCATCTTTTTCTTGGCAAATAAGAGGAATAGT
Eristalinus aeneus genome assembly, chromosome: 4.
OY019133.1:76086302-76086321
CGGCAACACAGCAGCAGATCACTTAAGATC76086302GCCATCTGAACAGAATGTGCGCCCCCGCACCCCCTAGAGAGGGAACGTGA
Sarcophilus harrisii genome assembly, chromosome: 6.
LR735559.1:34340407-34340426
TAGCCCAGTATCTGTTGCAATACACTTAGC34340407GCACATTCTGTTCAGATGGCTCCAGATCTGGAATCCAGTGCTGAATATTT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:18628211-18628230
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18628211GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:18701387-18701406
ACTATTCCTCTTAGTTGCCAAGAAAAAGAT18701387GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:18510168-18510187
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18510168GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:17018730-17018749
ACTATTCCTCTTATTTGCCAAGAAAAAGAT17018730GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:18248403-18248422
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18248403GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus domestica genome assembly, chromosome: 12.
OU696688.1:18277200-18277219
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18277200GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus domestica genome assembly, chromosome: 12.
OU744553.1:18316834-18316853
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18316834GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus domestica genome assembly, chromosome: 12.
OU744964.1:17880522-17880541
ACTATTCCTCTTATTTGCCAAGAAAAAGAT17880522GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC
Malus domestica genome assembly, chromosome: 12.
OU745002.1:18059200-18059219
ACTATTCCTCTTATTTGCCAAGAAAAAGAT18059200GCACATTCTGTTCAGATGGCATTGTCAAACCACCTCCTTTCACCTAATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gccatctgaacagaatgtgc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gccatctgaacagaatgtgc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.324 | 0.315 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATCTGAACAGAATGTGC&k=0&no_gap=0&offset=0&limit=50
0.422 | 0.098 | search_minus_done; http://172.18.8.135:50400/match?q=GCACATTCTGTTCAGATGGC&k=0&no_gap=0&offset=0&limit=45
0.428 | 0.007 | cgi_end;

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