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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:47:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AUAC-aba51g04.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED319682.1:205-222
ATTCGGCTTGAACAAGAAATTGAGAGGTAT205GCCATTGCATCTTACACGATATGCACCGTGCGTACTGTTCACTTGATT
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:154473-154490
GTGAGGGGGACATTTATGGAATTTGAGAAT154473GCCATTGCATCTTACACGACAAGTAACCCTTTTGCTGGAGGAGGAGTT
Agriotes lineatus genome assembly, chromosome: 2.
OW679195.1:180211588-180211605
TTCGGCCCCTTCTAAAATCTGGATCCGCGC180211588GCCATTGCATCTTACACGACTCCAAGATCGCTGCTCACTCCACTTCTA
Epinotia demarniana genome assembly, chromosome: 2.
OX244261.1:8429815-8429832
TACAGTAAATAAAACTGAGTAACTTAACAA8429815GCCATTGCATCTTACACGCATCTTACGTGGTATGACATATGCCACACA
Xanthostigma xanthostigma genome assembly, chromosome: 1.
OY754464.1:12450662-12450679
CGGTCGGATTATGTTCATAAATAAGGGAGA12450662GCCATTGCATCTTACACGTGGGTACTACCTAAATCCGATATACGACCG
Salmo trutta genome assembly, chromosome: 24.
LR584412.1:41935355-41935372
TTCTTTTTTGGTATGCCTCATTGGCACGGC41935355CGTGTAAGATGCAATGGCTGCCAAGCTACTTGACAATTACACACACAT
Leishmania panamensis strain MHOM/PA/94/PSC-1 chromosome 21 sequence.
CP009390.1:192289-192306
GACTTCCCCAGGAGCAGAAAGGCCCGACAT192289CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania guyanensis strain M4147 chromosome 21.
CP103933.1:196840-196857
GACTTCCCCAGGAGCAGAAAGGCCCGACAT196840CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania braziliensis MHOM/BR/75/M2904 complete genome, chromosome 21.
FR798996.1:195219-195236
GACTTCCCCAGGAGCAGAAAGGCCCGACAT195219CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania peruviana genome assembly, chromosome: 21.
LN609220.1:202583-202600
GACTTCCCCAGGAGCAGAAAGGCCCGACAT202583CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania peruviana genome assembly, chromosome: 21.
LN609257.1:201560-201577
GACTTCCCCAGGAGCAGAAAGGCCCGACAT201560CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania braziliensis MHOM/BR/75/M2904 genome assembly, plasmid: 21.
LS997620.1:194067-194084
GACTTCCCCAGGAGCAGAAAGGCCCGACAT194067CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Agriotes lineatus genome assembly, chromosome: 7.
OW679200.1:85704705-85704722
ACTTCGACAAACTGCCATTTCCATCTCACA85704705CGTGTAAGATGCAATGGCGGCGGATAATTTTTAAACTGACCTAACAAA
Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 21.
OY748415.1:200090-200107
GACTTCCCCAGGAGCAGAAAGGCCCGACAT200090CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA
Leishmania braziliensis isolate MHOM/BR/75/M2903 genome assembly, chromosome: 21.
OY748507.1:201699-201716
GACTTCCCCAGGAGCAGAAAGGCCCGACAT201699CGTGTAAGATGCAATGGCGGAGTGCGCGCAGCTCCTGCACCCGCTCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gccattgcatcttacacg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gccattgcatcttacacg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATTGCATCTTACACG&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGTAAGATGCAATGGC&k=0&no_gap=0&offset=0&limit=45
0.297 | 0.006 | cgi_end;

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