GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 19:07:11, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:6945046-6945065
TTCCGTATCAAACGTAATCTTGATGGCTCT6945046GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:6631792-6631811
TTCCGTATCAAATGTAATCTTGATGGCTCT6631792GCCGAACAATGTAAAGCTCGTCTTGTGGCTAAATGATTTCATCAGCGGCC
Malus domestica cultivar Red Fuji chromosome 5.
CP147797.1:6628218-6628237
TTCCGTATCAAACGTAATCTTGATGGCTCT6628218GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAATGAAGA
Malus domestica cultivar Red Fuji chromosome 5.
CP147822.1:6362702-6362721
TTCCGTATCAAACGTAATCTTGATGGCTCT6362702GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica cultivar WA 38 chromosome 5B.
CP165688.1:6407819-6407838
TTCCGTATCAAACGTAATCTTGATGGCTCT6407819GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica cultivar WA 38 chromosome 5A.
CP165705.1:6383991-6384010
TTCCGTATCAAACGTAATCTTGATGGCTCT6383991GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica cultivar Golden Delicious chromosome 05.
CP168769.1:6357723-6357742
TTCCGTATCAAACGTAATCTTGATGGCTCT6357723GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica cultivar Golden Delicious chromosome 05.
CP168786.1:6665645-6665664
TTCCGTATCAAACGTAATCTTGATGGCTCT6665645GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:6651506-6651525
TTCCGTATCAAACGTAATCTTGATGGCTCT6651506GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAATGAAGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:6821493-6821512
TTCCGTATCAAACGTAATCTTGATGGCTCT6821493GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:6695529-6695548
TTCCGTATCAAACGTAATCTTGATGGCTCT6695529GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAGTGAAGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:6599932-6599951
TTCCGTATCAAACGTAATCTTGATGGCTCT6599932GCCGAACAATGTAAAGCTCGTCTTTATTAACACTATGAATCTAATGAAGA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:39572433-39572452
TCTTCACTAGATTCATAGTGTTAATAAAGA39572433CGAGCTTTACATTGTTCGGCAGAGCCATCAAGATTACGTTTGATACGGAA
Chaenomeles sinensis isolate sampleA chromosome 02.
CP162365.1:4679864-4679883
GGCCACTGATGAAATCATTTAGCCACAAGA4679864CGAGCTTTACATTGTTCGGCAGAGCCAACAAGATTACGTTTGATACGGAA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:39212311-39212330
TCTTCATTAGATTCATAGTGTTAATAAAGA39212311CGAGCTTTACATTGTTCGGCAGAGCCATCAAGATTACGTTTGATACGGAA
Nephrotoma guestfalica genome assembly, chromosome: 3.
OY829915.1:240785120-240785139
CAAATACAATTAAAGTCAAATTACACACCT240785120CGAGCTTTACATTGTTCGGCGGCTTCTAGAAATAAAATTTACGTTATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gccgaacaatgtaaagctcg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gccgaacaatgtaaagctcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.170 | 0.161 | search_plus_done; http://172.18.8.135:50800/match?q=GCCGAACAATGTAAAGCTCG&k=0&no_gap=0&offset=0&limit=50
0.284 | 0.114 | search_minus_done; http://172.18.8.135:50800/match?q=CGAGCTTTACATTGTTCGGC&k=0&no_gap=0&offset=0&limit=38
0.287 | 0.003 | cgi_end;

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