GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-06 17:19:31, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdrtp1011I09_e38539.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5', mRNA sequence.
GO562075.1:120-140
ATTACTTGCAACATAGTAGCATGTAAACAT120GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:45426888-45426908
TTAACTTGCAACATAGTAGCATGTAAACAT45426888GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:49621728-49621748
ATTACTTGCAACATAGTAGCATGTAAACAT49621728GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:46264840-46264860
ATTACTTGCAACATAGTAGCATGTAAACAT46264840GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:46101058-46101078
TTAACTTGCAACATAGTAGCATGTAAACAT46101058GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTTTTAGATCTTTG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:6785632-6785652
CAAAGATCTAATACTATTTTACTTAGTGAA6785632CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:6428000-6428020
CAAAGATCTAATACTATTTTACTTAGTGAA6428000CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACCATGTTGCAAGTTAT
Malus domestica cultivar Red Fuji chromosome 6.
CP147798.1:6786568-6786588
CAAAGATCTAATACTATTTTACTTAGTGAA6786568CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Red Fuji chromosome 6.
CP147823.1:6884146-6884166
CAAAGATCTAATACTATTTTACTTAGTGAA6884146CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar WA 38 chromosome 15B.
CP165698.1:6853465-6853485
CAAAGATCTAATACTATTTTACTTAGTGAA6853465CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar WA 38 chromosome 15A.
CP165715.1:6741772-6741792
CAAAGATCTAATACTATTTTACTTAGTGAA6741772CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Golden Delicious chromosome 15.
CP168779.1:6865865-6865885
CAAAGATCTAATACTATTTTACTTAGTGAA6865865CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Golden Delicious chromosome 15.
CP168796.1:6704643-6704663
CAAAGATCTAATACTATTTTACTTAGTGAA6704643CAATGCTGAGAAACTCAAGGCATGTTTGCATGCTACAATATTGCAAGTAAT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:6881627-6881647
CAAAGATCTAATACTATTTTACTTAGTGAA6881627CAATGCTGAGAAACTCAAGGCATGTTTGCATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:6794116-6794136
CAAAGATCTAATACTATTTTACTTAGTGAA6794116CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:6934177-6934197
CAAAGATCTAATACTATTTTACTTAGTGAA6934177CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:6859565-6859585
CAAAGATCTAATACTATTTTACTTAGTGAA6859565CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:6847820-6847840
CAAAGATCTAATACTATTTTACTTAGTGAA6847820CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gccttgagtttctcagcattg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gccttgagtttctcagcattg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.181 | search_plus_done; http://172.18.8.135:50800/match?q=GCCTTGAGTTTCTCAGCATTG&k=0&no_gap=0&offset=0&limit=50
0.264 | 0.074 | search_minus_done; http://172.18.8.135:50800/match?q=CAATGCTGAGAAACTCAAGGC&k=0&no_gap=0&offset=0&limit=45
0.273 | 0.009 | cgi_end;

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