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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:55:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 21.
LR877208.1:47279610-47279627
GGACAGGGACAGCGTCTCTGGAGTCCACAG47279610GCTCGGGCTGACTCTTCCCTCTGCAGATCTCCTGCTCTCCGGCTCTGA
Onychomys leucogaster genome assembly, chromosome: 21.
OX460391.1:38113182-38113199
GGACAGGGACAGCGTCTCTGGAGTCCACAG38113182GCTCGGGCTGACTCTTCCCTCTGCAGATCTCCTGCTCTCCGGCTCTGA
Peromyscus eremicus genome assembly, chromosome: 22.
OX460415.1:36288352-36288369
GGCCTGGGTTAGCGTCTCTGGAGTCCACAG36288352GCTCGGGCTGACTCTTCCCTCTGCGGATCTCCTGCTCTCCGGCGTGGA
Onychomys leucogaster genome assembly, chromosome: 21.
OX460438.1:38286439-38286456
GGACAGGGACAGCATCTCTGGAGTCCACAG38286439GCTCGGGCTGACTCTTCCCTCTGCAGATCTCCTGCTCTCCGGCTCTGA
Peromyscus eremicus genome assembly, chromosome: 22.
OX460487.1:38814750-38814767
GGCCTGGGTTAGCATCTCTGGAGTCCTCAG38814750GCTCGGGCTGACTCTTCCCTCTGTGGATCTCCTGCTCTCCAGCGTGGA
Onychomys torridus genome assembly, chromosome: 21.
OX460902.1:47279610-47279627
GGACAGGGACAGCGTCTCTGGAGTCCACAG47279610GCTCGGGCTGACTCTTCCCTCTGCAGATCTCCTGCTCTCCGGCTCTGA
Caprimulgus europaeus genome assembly, chromosome: Z.
OU015527.1:64319898-64319915
TCTCTTCCAGGGTTACCTCTCTGGGGGATC64319898GCTCGGGCTGACTCTTCCGGGGTTTCTGTTTTGGGACTGTCTCTACTC
Rhododendron vialii isolate Sample 1 chromosome 4a.
CP127068.1:14824165-14824182
AGGGAGATGCAAGCTCTCAGACGTCTTATG14824165GCTCGGGCTGACTCTTCCTCTACTATAGCTCCTACTTCTACAGCAGCT
Triticum aestivum genome assembly, chromosome: 4B.
LR862518.1:171752545-171752562
ATACTGTCCGGGGCCAACTGAGTCAACCAC171752545GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR862539.1:168975775-168975792
ATACTGTCCGGGGCCAACTGAGTCAACCAC168975775GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR862560.1:169959480-169959497
ATACTGTCCGGGGCCAACTGAGTCAACCAC169959480GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR865468.1:168644600-168644617
ATACTGTCCGGGGCCAACTGAGTCAACCAC168644600GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR865489.1:168431779-168431796
ATACTGTCCGGGGCCAACTGAGTCAACCAC168431779GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR865510.1:169385115-169385132
ATACTGTCCGGGGCCAACTGAGTCAACCAC169385115GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR865749.1:172371778-172371795
ATACTGTCCGGGGCCAACTGAGTCAACCAC172371778GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR865770.1:169297866-169297883
ATACTGTCCGGGGCCAACTGAGTCAACCAC169297866GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR877319.1:172692201-172692218
ATACTGTCCGGGGCCAACTGAGTCAACCAC172692201GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LR878445.1:170135018-170135035
ATACTGTCCGGGGCCAACTGAGTCAACCAC170135018GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
LS992090.1:170104903-170104920
ATACTGTCCGGGGCCAACTGAGTCAACCAC170104903GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
OU015731.1:173207724-173207741
ATACTGTCCGGGGCCAACTGAGTCAACCAC173207724GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
OU343179.1:173187813-173187830
ATACTGTCCGGGGCCAACTGAGTCAACCAC173187813GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
OU963882.1:164704556-164704573
ATACTGTCCGGGGCCAACTGAGTCAACCAC164704556GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Triticum aestivum genome assembly, chromosome: 4B.
OX637235.1:145798324-145798341
ATACTGTCCGGGGCCAACTGAGTCAACCAC145798324GCTCGGGCTGACTCTTCCAACATAAGAGGGAGATGCTTCATTGCAATC
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:24127173-24127190
TCCATGATCACTTCTTGTTCGGCAAGAGAA24127173GCTCGGGCTGACTCTTCCTTTTCAAACTTTTCCTCTTCAGCTTCTTTC
Bradyrhizobium sp. WD16 chromosome, complete genome.
CP028908.1:4977938-4977955
GCACCTGCTCGCGACGGTCGACCAGTGTCG4977938GCTCGGGCTGACTCTTCCAGTCCGCGGCGTCGCAGCCGCGGCATTCGC
Streptomyces sp. NBC_01361 chromosome, complete genome.
CP109589.1:10695699-10695716
GCCAGTCACTCGGTCGCTCTGGTGCGTGCG10695699GCTCGGGCTGACTCTTCCAGTGCGGCCATCAAGTCCACCGCGGGCCCG
Pecten maximus genome assembly, chromosome: 8.
LR736845.1:35804599-35804616
TATTTCTCCGCCTGTTCTTTAGGGAGATTG35804599GCTCGGGCTGACTCTTCCAAAGCGTCCTGCATGTCACATTCGTCATCG
Mus musculus 16 days neonate male diencephalon cDNA, RIKEN full-length enriched library, clone:G630085N14, 3' end partial sequence.
BB808122.1:231-248
GCAGGAGAAGGGAGGGGTGCACAGTGTGGG231GGAAGAGTCAGCCCGAGCCAGGGGTTGACCCCGGGGGGAGGGGGGCAT
Citrus limon mRNA, clone: LLL1160, 5'-end sequence, expressed in leaf.
DC892242.1:351-368
GAAAGAAGCTGAAGAGGAAAAGTTTGAAAA351GGAAGAGTCAGCCCGAGCTTCTCTTGCCGAACAAGAAGTGATCATGGA
CS00-C1-100-080-C11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY655599.1:496-513
GAAAGAAGCTGAAGAGGAAAAGTTTGAAAA496GGAAGAGTCAGCCCGAGCTTCTCTTGCCGAACAAGAAGTGATCATGGA
CS00-C5-003-008-H10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY744468.1:465-482
GAAAGAAGCTGAAGAGGAAAAGTTTGAAAA465GGAAGAGTCAGCCCGAGCTTCTCTTGCCGAACAAGAAGTGATCATGGA
CS00-C5-003-006-H03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY745002.1:465-482
GAAAGAAGCTGAAGAGGAAAAGTTTGAAAA465GGAAGAGTCAGCCCGAGCTTCTCTTGCCGAACAAGAAGTGATCATGGA
659 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 802 5', mRNA sequence.
GO242011.1:111-128
GAAAGAAGCTGAAGAAGAAAAGTTTGAAAA111GGAAGAGTCAGCCCGAGCTTCTCTTGCCGAACAAGAAGTGATCATGGA
Secale cereale genome assembly, chromosome: 4R.
LR738712.1:768530105-768530122
CGTTCCTATGAAGCATTTACCGTCGATGCT768530105GGAAGAGTCAGCCCGAGCCTGGCTGAATCAATTGGCCCCCGCTAGCAT
Triticum turgidum subsp. durum genome assembly, chromosome: 4B.
LT934118.1:169551411-169551428
GATTGCAATGAAGCATCTCCCTCTTATGTT169551411GGAAGAGTCAGCCCGAGCGTGGTTGACTCAGTTGGCCCCGGACAGTAT
Sherardia arvensis genome assembly, chromosome: 8.
OX415242.1:26853573-26853590
GAATGCGAAACAAATTGAAGATAGATATTC26853573GGAAGAGTCAGCCCGAGCGTTCAGTCCGAGAGGATGCCCGAGCTAATT
Triticum timopheevii genome assembly, chromosome: 6G.
OY997272.1:385973921-385973938
AGTAGCAATGAAACATCTTCCTCTGATGTT385973921GGAAGAGTCAGCCCGAGCATGGTTGACTCAGTTAGCTCTAGGCAGTAT
Epinotia bilunana genome assembly, chromosome: 22.
OX346274.1:5856457-5856474
CACATATAGTCCCTGTACCACCACATACCG5856457GGAAGAGTCAGCCCGAGCCATGTCGGCGGGCCTAGCTGAGTTTCTTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gctcgggctgactcttcc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gctcgggctgactcttcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.169 | 0.161 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCGGGCTGACTCTTCC&k=0&no_gap=0&offset=0&limit=50
0.605 | 0.436 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGAGTCAGCCCGAGC&k=0&no_gap=0&offset=0&limit=23
0.612 | 0.007 | cgi_end;

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