GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:29:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig24111, mRNA sequence.
JW074355.1:430-453
CCCACAACCTGAGCATTTTACATTGTTGCT430GGAACCACCATTAGATACCGATAATATTGTACCAAAGAAGGAAGTATTTTCCGT
Sequence 5335 from patent US 10760088.
MV635074.1:916-939
ACGGGAAATACTTCCTTCTTTGGTACAATA916TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGTTGTGGG
Sequence 5335 from patent US 11111499.
MY426957.1:916-939
ACGGGAAATACTTCCTTCTTTGGTACAATA916TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGTTGTGGG
KS20015A10 KS20 Capsicum annuum cDNA, mRNA sequence.
GD094666.1:418-441
ACGGGAAATACTTCCTTCTTTGGTACAATA418TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGTTGTGGG
TSA: Capsicum annuum MGMT_Contig12098, mRNA sequence.
JW062342.1:541-564
ACGGAAAATACTTCCTTCTTTGGTACAATA541TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGGTAAGTC
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:332524784-332524807
ACGGGAAATACTTCCTTCTTTGGTACAATA332524784TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGGTAAGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:333989971-333989994
ACGGGAAATACTTCCTTCTTTGGTACAATA333989971TTATCGGTATCTAATGGTGGTTCCAGCAACAATGTAAAATGCTCAGGGTAAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggaaccaccattagataccgataa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggaaccaccattagataccgataa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.345 | 0.336 | search_plus_done; http://172.18.8.135:50400/match?q=GGAACCACCATTAGATACCGATAA&k=0&no_gap=0&offset=0&limit=50
0.657 | 0.313 | search_minus_done; http://172.18.8.135:50400/match?q=TTATCGGTATCTAATGGTGGTTCC&k=0&no_gap=0&offset=0&limit=49
0.661 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).