GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:40:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig23247, mRNA sequence.
JW073491.1:2263-2286
TGAATCAAGAACTATGTTTCCTGACTCAAG2263GGAACCTATATTGTCCTTTGCATCTTTACATTCTGAAATGGGAAGCTCTAATTT
Solanum melongena mRNA, clone: SHT06M03, 5'end, expressed in shoot at 7d after germination.
FS066401.1:393-416
AAATTAGAGCTTCCCATTTCAGAATACAAA393GATGCAAAGGACAATATAGGTTCCCTTGAGGCAGGAAACATATTACTTGATTCA
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:243579568-243579591
AAATTAGAGCTTCCCATTTCAGAATGTAAA243579568GATGCAAAGGACAATATAGGTTCCCTTGAGTCAGGAAACATAGTTCTTGATTCA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:128900520-128900543
AAATTAGAGCTTCCCATTTCAGAATGTAAA128900520GATGCAAAGGACAATATAGGTTCCCTTGAGACAGGAAACATAGTTCTTGATTCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:248746449-248746472
AAATTAGAGCTTCCCATTTCAGAATGTAAA248746449GATGCAAAGGACAATATAGGTTCCCTTGAGTCAGGAAACATAGTTCTTGATTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggaacctatattgtcctttgcatc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggaacctatattgtcctttgcatc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=GGAACCTATATTGTCCTTTGCATC&k=0&no_gap=0&offset=0&limit=50
0.249 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=GATGCAAAGGACAATATAGGTTCC&k=0&no_gap=0&offset=0&limit=49
0.252 | 0.003 | cgi_end;

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