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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:17:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 11.
LR877198.1:10538608-10538625
GGTGCATGTGGAGACCCCAAATTGACACTG10538608GGAGATATCGCTCCACTTATTAATTGAGGCAGGGTTCCTCAGCCGAAC
Onychomys arenicola genome assembly, chromosome: 11.
OX460357.1:10923627-10923644
GGTGCATGTGGAGACCCCAGATTGACACTG10923627GGAGATATCGCTCCACTTATTAATTGAGGCAGGGTTCCTCAGCCGAAC
Onychomys torridus genome assembly, chromosome: 11.
OX460892.1:10538608-10538625
GGTGCATGTGGAGACCCCAAATTGACACTG10538608GGAGATATCGCTCCACTTATTAATTGAGGCAGGGTTCCTCAGCCGAAC
Plectropomus leopardus DNA, chromosome 13, nearly complete sequence.
AP022712.1:22569222-22569239
CTGTGGTAAGCAGGACATGAAAAAAGGGCA22569222GGAGATATCGCTCCACTTCTTAAATTAGGCCACAAAAGCAGGCTGTTG
Gymnoscopelus microlampas genome assembly, chromosome: 18.
OY732720.1:7452090-7452107
CATACATACATATATGTATAGGGCTTCTAT7452090GGAGATATCGCTCCACTTGACAGGGCGATTACTGTTGGGGTCACACCG
BR070159 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-23A03 5', mRNA sequence.
EX085515.1:441-458
TCTCTTCTCACCGACGCATAGTTATCTCTT441GGAGATATCGCTCCACTTCCTGCTCCACTTCCTGCTCGTTGAGGAAAC
CPAD-aad36d09.b1 PB2801_EST_CPAD1 Caenorhabditis brenneri cDNA similar to ref|NP_496210.1| ATPase Associated with diverse cellular Activities [Caenorhabditis elegans] pir|T22612 hypothetical protein F
FF106261.1:405-422
TCTGGACTCGATTATGCAGTTCTCACTGGA405GGAGATATCGCTCCACTTGGTCGTGATGGAGTGTCCGCTATTCACAAA
TSA: Chorispora bungeana CK_27764 mRNA sequence.
KA015831.1:136-153
TCTCTTCTCACTGACGCATAATTGTCTCTT136GGAGATATCGCTCCACTTCCTGCTCCACTACCAGAACGTTGAGGAAAC
TSA: Chorispora bungeana T_08062 mRNA sequence.
KA044892.1:61-78
TCTCTTCTCACTGACGCATAATTGTCTCTT61GGAGATATCGCTCCACTTCCTGCTCCACTACCAGAACGTTGAGGAAAC
BOT01-68M7TF BOT01 Brassica oleracea genomic clone BOT01-68M7, genomic survey sequence.
FI720191.1:386-403
TCTCTCCTAACCGACGCATAGTTATCTCTT386GGAGATATCGCTCCACTTCCTTGCAATCCAAGCCAACCAAACAAACAA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 66 unordered pieces.
FJ789649.1:403701-403718
TCTCTTCTCACCGACGCATAGTTATCTCTT403701GGAGATATCGCTCCACTTCCTTGCGTTCCAAGCCAACGAAACCAAAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030F10, complete sequence.
AC189302.2:66368-66385
TCTCTTCTCACCGACGCATAGTTATCTCTT66368GGAGATATCGCTCCACTTCCTTGCGTTCCAAGCCAACGAAACCAAAAT
Ceratobasidium sp. AG-Ba isolate JN chromosome 7.
CP059616.1:345765-345782
GAAGCCAAGAACTCACCGATGCGAATAACC345765GGAGATATCGCTCCACTTCTTCGGCGTCATACATGGCACGTAGCTGAT
Ceratobasidium sp. AG-Ba isolate LY chromosome 7.
CP059648.1:397813-397830
GAAGCCAAGAACTCACCGATGCGAATAACC397813GGAGATATCGCTCCACTTCTTCGGCGTCATACATGGCACGTAGCTGAT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25913730-25913747
TCTCTTCTCACCGACGCATAGTTATCTCTT25913730GGAGATATCGCTCCACTTCCTTGCGTTCCAAGCCAACGAAACCAAAAT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:58413021-58413038
TCTCTCCTCACTGATGCATAGTTATCTCTT58413021GGAGATATCGCTCCACTTCCTTGTGTTCCAAGCCAACCAAACAAAAGA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41110958-41110975
TCTCTCCTAACCGACGCATAGTTATCTCTT41110958GGAGATATCGCTCCACTTCCTTGTGATCCAAGCCAACCAAACAAACAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50359888-50359905
TCTCTCCTAACCGACGCATAGTTATCTCTT50359888GGAGATATCGCTCCACTTCCTTGTGATCCAAGCCAGCCAAACAAACAA
Thlaspi arvense genome assembly, chromosome: 1.
OU466857.2:64717347-64717364
TCTCTCCTCACCGACGCATAGTTGTCTCTT64717347GGAGATATCGCTCCACTTCCTTGTAATCCAAGGAAACACAAACAAAAT
Barbarea vulgaris genome assembly, chromosome: 3.
OY763889.1:30497673-30497690
TCTCTCCTCACCGACGCATAGTTATCTCTT30497673GGAGATATCGCTCCACTTCCTAGGCGATCCAATCAAAACATAAAAAGG
Cardamine chenopodiifolia genome assembly, chromosome: 2.
OZ000460.1:14230274-14230291
TCTCTTCTCACAGACGCATAGTTATCTCGT14230274GGAGATATCGCTCCACTTCCTTGGTGATCCAAGCAAAATAAACAAACA
1_Tdi_b3v08.
OA568957.1:10559-10576
CGTCTCCGCCACTTGGGGAGGCACCCTACC10559GGAGATATCGCTCCACTTACTACCCCCAACATCATAGCATCCATCCGA
1_Tdi_b3v08.
OA572537.1:22777-22794
CGTCTCCGCCACTTGGGGAGGCACCCTACC22777GGAGATATCGCTCCACTTACTACCCCCAACATCATAGCATCCATCCGA
2_Tsi_b3v08.
OC000371.1:182661-182678
TCTCCCCACCACCTAGGGAGGCGCCCAACA182661GGAGATATCGCTCCACTTACTAAATATATGAATAAATAAATGTTCATA
1_Tps_b3v08.
OD000810.1:154005-154022
CGTCTCCGCCACTTGGGGAGGCACCCTACC154005GGAGATATCGCTCCACTTACTACCCCCAACATCACAATGGACTTACAA
Sepiola atlantica genome assembly, chromosome: 6.
OY744520.1:126508978-126508995
CGCTGCGGACTGCATTCCTTGTGTTCAATC126508978GGAGATATCGCTCCACTTTCAGTAAGTACAACAGCAACGTTTGCCTGT
Sciurus carolinensis genome assembly, chromosome: 12.
LR738602.1:75218005-75218022
AAAGTAACACCTTGAAAGCAGAGGGGATGA75218005AAGTGGAGCGATATCTCCAGAAAGGAAACTAAAAGCTTACATTGACAG
Thalassophryne amazonica genome assembly, chromosome: 13.
LR722978.1:89763611-89763628
TCCCACAGCAGCCTATACTCAAGGTTCTTG89763611AAGTGGAGCGATATCTCCACCTTGTGATGCTTAACATTAATGCAGATA
BOIDG28TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIDG28, genomic survey sequence.
CC950776.1:431-448
TTGTTTGTTTGGTTGGCTTGGATTGCAAGG431AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTTAGGAGAGA
BOT01-4A19TF BOT01 Brassica oleracea genomic clone BOT01-4A19, genomic survey sequence.
FI686704.1:436-453
TCTTTTGTTTGGTTGGCTTGGAACACAAGG436AAGTGGAGCGATATCTCCAAGAGATAACTATGCATCAGTGAGGAGAGA
BOT01-25B24TR BOT01 Brassica oleracea genomic clone BOT01-25B24, genomic survey sequence.
FI698683.1:374-391
TCTTTTGTTTGGTTGGCTTGGAACACAAGG374AAGTGGAGCGATATCTCCAAGAGATAACTATGCATCAGTGAGGAGAGA
Brassica rapa subsp. pekinensis clone KBrB001E05, complete sequence.
CU695251.1:73509-73526
ATTTTGGTTTCGTTGGCTTGGAACGCAAGG73509AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTGAGAAGAGA
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 7.
CP094637.1:13074307-13074324
TTTTTCGTATGTTTTGCTTGAATCACAAGG13074307AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTTGGTGAGGAGAGA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:554644-554661
TTGTTTGTTTGGTTGGCTTGGATCACAAGG554644AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTTAGGAGAGA
Camelina sativa cultivar CO46 chromosome 14.
CP131544.1:920976-920993
TTGTTTGTATGTTTTGCTTGAAACGCAAGG920976AAGTGGAGCGATATCTCCAAGAGATAATTATGCGTCGGTGAGGAGAGA
Camelina sativa cultivar CO46 chromosome 17.
CP131547.1:872185-872202
TGTTTGTATGTTTTGCTTGAATCGCAAAGG872185AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTAAGGAGAGA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:828439-828456
ATTTTGGTTTCGTTGGCTTGGAACGCAAGG828439AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTGAGAAGAGA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:875703-875720
TCTTTTGTTTGGTTGGCTTGGAACACAAGG875703AAGTGGAGCGATATCTCCAAGAGATAACTATGCATCAGTGAGGAGAGA
Brassica rapa genome, scaffold: A10.
LR031577.1:888896-888913
TTTTGGTTTTGGTTGGCTTGGAACACAAGG888896AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTGAGAAGAGA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:838856-838873
TTTTTTGTTTGGTTGGCTTGGAACACAAGG838856AAGTGGAGCGATATCTCCAAGAGATAACTATGCATCAGTGAGGAGAGA
Arabidopsis arenosa genome assembly, chromosome: 1.
LR999451.1:815937-815954
TTGTTTGTTTGCTTTGCTTGGATCACAAGG815937AAGTGGAGCGATATCTCCTAGAGATAACTATGCGTCGGTGAGGAGGGA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:886410-886427
TTTTGGTTTTGGTTGGCTTGGAACACAAGG886410AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTGAGAAGAGA
Sherardia arvensis genome assembly, chromosome: 3.
OX415237.1:33474129-33474146
ACAAGATTGTTACTAAGATCATAGCCAATA33474129AAGTGGAGCGATATCTCCCTAGGCTTATTGATCCTTGCCAGGGGGCCT
Cardamine flexuosa genome assembly, chromosome: 1.
OY743214.1:767530-767547
TTTGTTTGTTTTGGTTGGATCACCCACAGG767530AAGTGGAGCGATATCTCCAAGGGATAACTATGCGTCGGTGAGGAGAGA
Cochlearia excelsa genome assembly, chromosome: 3.
OY748329.1:357041-357058
CTTATGTTTTGTGTTGCTTGGATTACAAGG357041AAGTGGAGCGATATCTCCGAGAGATAACTATGCGTCTGTGAGGAGAGA
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:616651-616668
ACATCGTCTGTTTTGGTTGCATCACCGAGG616651AAGTGGAGCGATATCTCCAAGAGATAATTATGCCTCGGTGAGGAGAGA
Nasturtium officinale genome assembly, chromosome: 3.
OY978501.1:627355-627372
TTGTGTTTGTTATGCTTGGATCACCCAAGG627355AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCAGTGAGGAGAGA
Cardamine chenopodiifolia genome assembly, chromosome: 1.
OZ000459.1:749291-749308
TGTTTGTTTGTTTTGCTTGGATTACCAAGG749291AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTAAGGAGAGA
Cardamine chenopodiifolia genome assembly, chromosome: 9.
OZ000467.1:430971-430988
TGTTTGTTTGTTTTGCTTGGATCACCAAGG430971AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGGTGAGAAGAGA
Cardamine chenopodiifolia genome assembly, chromosome: 17.
OZ000475.1:629644-629661
TATTTGTTTGTTTTGCTTTGATCACCAAGG629644AAGTGGAGCGATATCTCCAAGAGATAACTATGCGTCGTTGAGGAGAGA
2_Tcm_b3v08.
OE179806.1:203696-203713
TATGAACATTTATTTATTCATATATTTAGT203696AAGTGGAGCGATATCTCCTGTTGGGCGCCTCCCTAGGTGGTGGGGAGA
Lapara coniferarum genome assembly, chromosome: 4.
OX438922.1:28321252-28321269
GATGTAAATACAAATATCGACATTTACCTC28321252AAGTGGAGCGATATCTCCACTCAATACGTATGAAAGGATGTCGATTCT
Caenorhabditis sp. 8 KK-2011 genome assembly, chromosome: II.
OY751547.1:8540457-8540474
TTTGTGGATGGCAGAAACACCGTCTCTTCC8540457AAGTGGAGCGATATCTCCACCAGTAAGAATGGCGTAGTCCAAACCACT
Helleia helle genome assembly, chromosome: 3.
OY971416.1:19584401-19584418
ATCTCCCTCAAATTGGACCAGCCAATTCTG19584401AAGTGGAGCGATATCTCCTCAAATTCTATGTTATTTTCATAGAAAGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ggagatatcgctccactt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ggagatatcgctccactt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.416 | 0.407 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGATATCGCTCCACTT&k=0&no_gap=0&offset=0&limit=50
0.649 | 0.233 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTGGAGCGATATCTCC&k=0&no_gap=0&offset=0&limit=24
0.667 | 0.018 | cgi_end;

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