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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 05:24:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KR 1020160060384-A/2: A method for identifying pear varieties using microsatellites markers.
LG149948.1:1-20
1GGAGTGGGTTTGAGAAGGTT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:6560361-6560380
CCACCATGACAGTTGGGTTGATCACTTTTA6560361GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:6383308-6383327
ACCACCATGACAGTTGGGTTGATCACTTTA6383308GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:5940757-5940776
ACCACCATCACAGTTGGGTTGATCACTTTA5940757GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:6572451-6572470
ACCACCATGACAGTTGGGTTGATCACTTTA6572451GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 17.
OU696693.1:6386429-6386448
ACCACCATGACAGTTGGGTTGATCACTTTA6386429GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 17.
OU744969.1:6383356-6383375
ACCACCATGACAGTTGGGTTGATCACTTTA6383356GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 17.
OU745007.1:6805532-6805551
ACCACCATGACAGTTGGGTTGATCACTTTA6805532GGAGTGGGTTTGAGAAGGTTTATAGAGAGAGAGAGAGAGAGAGAGAGAGA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:7314211-7314230
ACCACCATGACAGTTGGGTTGATCACTTTA7314211GGAGTGGGTTTGAGAAGGTTTAGAGAGAGAGAGAGTGAGTGAGTGGAGGC
Sarcophilus harrisii genome assembly, chromosome: 5.
LR735558.1:254527448-254527467
CAAGCTCACAGAGGGATATTGCTTCCATAA254527448AACCTTCTCAAACCCACTCCCATCCGGGGGTCACAGTAGACCACTGGCTT
Vitis rotundifolia cultivar Noble chromosome 11.
CP092936.1:1431643-1431662
TTTTTTTTCCTTGCATGGAACTAAACCTAG1431643AACCTTCTCAAACCCACTCCAACAAATTATGGATCCAAAAAACAAGAATT
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:27887351-27887370
TCTCTCTCTCTCTCTCTCTCTCTCTCTATA27887351AACCTTCTCAAACCCACTCCTAAAAGTGATCAACCCAACTGTCATGGTGG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:28385453-28385472
TCTCTCTCTCTCTCTCTCTCTCTCTCTATA28385453AACCTTCTCAAACCCACTCCTAAAGTGATCAACCCAACTGTCATGGTGGT
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:27708427-27708446
GCCTCCACTCTCTCTCTCTCTCTCTCTATA27708427AACCTTCTCAAACCCACTCCTAAAAGTGATCAACCCAACTGTCATGGTGG
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:21740901-21740920
CCACTCTCTCTCTCTCTCTCTCTCTCTATA21740901AACCTTCTCAAACCCACTCCTAAAGTGATCAACCCAACTGTCATGGTGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ggagtgggtttgagaaggtt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ggagtgggtttgagaaggtt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.402 | 0.393 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGTGGGTTTGAGAAGGTT&k=0&no_gap=0&offset=0&limit=50
0.528 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=AACCTTCTCAAACCCACTCC&k=0&no_gap=0&offset=0&limit=41
0.532 | 0.004 | cgi_end;

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