GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:58:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Populus trichocarpa clone Pop1-16J18, complete sequence.
AC149481.1:70205-70228
CCTACCAGCAAATCATCAACATCAAGAAAG70205GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Populus trichocarpa clone Pop1-12C14, complete sequence.
AC149541.1:72075-72098
CCTACCAGCAAATCATCAACATCAAGAAAG72075GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Populus deltoides teosinte-branched-like protein (TB1) gene, partial cds.
EF396898.1:1181-1204
CCTACCAGCAAATCATCAACATCAAGAAAG1181GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Populus maximowiczii teosinte-branched-like protein (TB1) gene, partial cds.
EF396899.1:1181-1204
CCTACCAGCAAATCATCAACATCAAGAAAG1181GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Populus nigra teosinte-branched-like protein (TB1) gene, partial cds.
EF396900.1:1181-1204
CCTACCAGCAAATCATCAACATCAAGAAAG1181GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Populus trichocarpa teosinte-branched-like protein (TB1) gene, partial cds.
EF396901.1:1181-1204
CCTACCAGCAAATCATCAACATCAAGAAAG1181GGATCGGGGAAGTGCTGCAAGAATGTTTGAGAACAAGATTCTATCGAGCTAGGG
Sequence 3498 from patent US 7989676.
GY313800.1:105-128
CCCTAGCTCGATAGAATCTTGTTCTCAAAC105ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG
ORNL093 Poplar BAC Library Populus trichocarpa genomic similar to Transcription factor, genomic survey sequence.
BH860619.1:896-919
CCCTAGCTCGATAGAATCTTGTTCTCAAAC896ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG
Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309092.1:245-268
CCCTAGCTCGATAGAATCTTGTTCTCAAAC245ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG
Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309093.1:192-215
CCCTAGCTCGATAGAATCTTGTTCTCAAAC192ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG
Populus deltoides teosinte-branched-like protein (TB1) gene, complete cds.
AF309094.1:193-216
CCCTAGCTCGATAGAATCTTGTTCTCAAAC193ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG
Populus x canescens teosinte-branched-like protein 1 (TB1) gene, complete cds.
AY012515.1:105-128
CCCTAGCTCGATAGAATCTTGTTCTCAAAC105ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGGTGATTTTCTGGTAGG
Populus nigra genome assembly, chromosome: 10.
OX637681.1:9112366-9112389
CCCTAGCTCGATAGAATCTTGTTCTCAAAC9112366ATTCTTGCAGCACTTCCCCGATCCCTTTCTTGATGTTGATGATTTGCTGGTAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggatcggggaagtgctgcaagaat
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggatcggggaagtgctgcaagaat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GGATCGGGGAAGTGCTGCAAGAAT&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCTTGCAGCACTTCCCCGATCC&k=0&no_gap=0&offset=0&limit=44
0.145 | 0.005 | cgi_end;

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