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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 00:27:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS10028H10 KS10 Capsicum annuum cDNA, mRNA sequence.
CA519692.1:90-113
TTTCAGATCTGACCAAAAACCTTTTCCAAT90GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
BJ02038B02 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908954.1:99-122
TTTCAGATCTGACCAAAAACCTTTTCCAAT99GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS13032A05 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054542.1:30-53
TTTCCATCTGACCAAAAACCTTTTCCAAT30GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS13035D12 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054847.1:84-107
TTTCAGATCTGACCAAAAACCTTTTCCAAT84GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS15019A05 KS15 Capsicum annuum cDNA, mRNA sequence.
GD065115.1:103-126
TTTCAGATCTGACCAAAAACCTTTTCCAAT103GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS15028A09 KS15 Capsicum annuum cDNA, mRNA sequence.
GD065966.1:103-126
TTTCAGATCTGACCAAAAACCTTTTCCAAT103GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS24057B05 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123151.1:106-129
TTTCAGATCTGACCAAAAACCTTTTCCAAT106GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS24062C12 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123647.1:90-113
TTTCAGATCTGACCAAAAACCTTTTCCAAT90GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:215555311-215555334
TTTCAGATCTGACCAAAAACCTTTTCCAAT215555311GGCGTTGAGAAACTTATACAAGGAGATAAAGGGCTTGAAGGTGAAGGAGGTTCC
KS19033F06 KS19 Capsicum annuum cDNA, mRNA sequence.
GD090376.1:404-427
GGAACCTCCTTCACCTTCAAGCCCTTTATC404TCCTTGTATAAGTTTCTCAACGCCATTGGAAAAGGTTTTTGGTCAGATCTGAAA
KS26014B05 KS26 Capsicum annuum cDNA, mRNA sequence.
GD131035.1:385-408
GGAACCTCCTTCACCTTCAAGCCCTTTATC385TCCTTGTATAAGTTTCTCAACGCCATTGGAAAAGGTTTTTGGTCAGATCTGAAA
TSA: Capsicum annuum MGMT_Contig23293, mRNA sequence.
JW073537.1:683-706
GGAACCTCCTTCACCTTCAAGCCCTTTATC683TCCTTGTATAAGTTTCTCAACGCCATTGGAAAAGGTTTTTGGTCAGATCTGAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:37687419-37687442
GGAACCTCCTTCACCTTCAAGCCCTTTATC37687419TCCTTGTATAAGTTTCTCAACGCCATTGGAAAAGGTTTTTGGTCAGATCTGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggcgttgagaaacttatacaagga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggcgttgagaaacttatacaagga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.611 | 0.602 | search_plus_done; http://172.18.8.135:50400/match?q=GGCGTTGAGAAACTTATACAAGGA&k=0&no_gap=0&offset=0&limit=50
0.855 | 0.245 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTTGTATAAGTTTCTCAACGCC&k=0&no_gap=0&offset=0&limit=41
0.858 | 0.003 | cgi_end;

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