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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 11:03:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOGPO21TF BOGP Brassica oleracea genomic clone BOGPO21, genomic survey sequence.
BH421276.1:486-507
ATCAGAAAATAAACAAAAGAATCTGAATCA486GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
BOT01-53O21TR BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI712616.1:185-206
ATCAGAAAATAAACAAAAGAATCTGAATCA185GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:230315-230336
ATCAGAAAATAAACAAAAGAATCTGAATCA230315GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTTAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:470820-470841
ATCAGAAAATAAACAAAAGAATCTGAATCA470820GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:842569-842590
ATCAGAAAATAAACAAAAGAATCTGAATCA842569GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCCTTCACA
BOGGI53TR BOGG Brassica oleracea genomic clone BOGGI53, genomic survey sequence.
BH582108.1:296-317
TGTGAAAGAAACATTTAAATAGTCAAACAA296AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:72901878-72901899
TGTGAAGGAAACATTTAAATAGTCAAACAA72901878AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41200366-41200387
TGTGAAAGAAACATTTAAATAGTCAAACAA41200366AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica rapa genome, scaffold: A10.
LR031577.1:17400144-17400165
TGTGAAAGAAACATTAAAATAGTCAAACAA17400144AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:72800558-72800579
TGTGAAGGAAACATTTAAATAGTCAAACAA72800558AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50467683-50467704
TGTGAAAGAAACATTTAAATAGTCAAACAA50467683AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:20137274-20137295
TGTGAAAGAAACATTAAAATAGTCAAACAA20137274AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggttttggacaggggttgactt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggttttggacaggggttgactt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.140 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTTTGGACAGGGGTTGACTT&k=0&no_gap=0&offset=0&limit=50
0.190 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTCAACCCCTGTCCAAAACC&k=0&no_gap=0&offset=0&limit=45
0.195 | 0.005 | cgi_end;

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